In forensic sciences, blood is a shred of essential evidence for reconstructing crime scenes. Blood identification and classification may help to confirm a suspect, although several chemical processes are used to recreate the crime scene. However, these approaches can have an impact on DNA analysis. A potential application of bloodstain identification and classification using Hyperspectral Imaging (HSI) can be used as substance clas-sification in forensic science for crime scene analysis. Therefore, this work proposes the use of a fast and compact Hybrid CNN to process HSI data for bloodstain identification and classification. For experimental and validation purposes, we perform exper-iments on a publicly available Hyperspectral-based Bloodstain dataset. This dataset has different types of substances i.e., blood and blood-like compounds, for instance, ketchup, artificial blood, beetroot juice, poster paint, tomato concentrate, acrylic paint, uncertain blood. We compare the results with state-of-the-art 3D CNN model and examine the results in detail and present a discussion of each tested architecture with limited availability of the training samples (e.g., only 5 % (792 samples) of the data samples are used to train the model, and validated on 5 % (792 samples) data samples and finally blindly tested on 90 % (14260 samples) of the data samples). The source code can be access on https://github.com/MHassaanButt/FCHCNN-for-HSIC