A hybrid stochastic model of the budding yeast cell cycle control mechanism

S Wang, M Ahmadian, M Chen, J Tyson… - Proceedings of the 7th …, 2016 - dl.acm.org
… , we present a hybrid (ODE/SSA) stochastic model for the budding yeast … a hybrid stochastic
model for the budding yeast cell cycle that is derived from Chen’s deterministic model.In this …

A hybrid stochastic model of the budding yeast cell cycle

M Ahmadian, JJ Tyson, J Peccoud, Y Cao - NPJ systems biology and …, 2020 - nature.com
… In this process, the mechanism of controlling cell-cycle … a hybrid stochastic model is developed
to study the effects of noise on the control mechanism of the budding yeast cell cycle. The …

A stochastic model of size control in the budding yeast cell cycle

M Ahmadian, J Tyson, Y Cao - Proceedings of the 2018 ACM …, 2018 - dl.acm.org
hybrid stochastic model is proposed to study the effect of molecular noise and size control
mechanism on the variabilities in cell cycle … is a new hybrid stochastic model that quantitatively …

Hybrid ode/ssa model of the budding yeast cell cycle control mechanism with mutant case study

M Ahmadian, S Wang, J Tyson, Y Cao - Proceedings of the 8th ACM …, 2017 - dl.acm.org
… In this work, we propose a hybrid stochastic model that represents the regulatory network
of the budding yeast cell cycle control mechanism, respectively, by Gillespie’s stochastic

A hybrid stochastic model of the budding yeast cell cycle

A Mansooreh, JJ Tyson, J Peccoud… - NPJ Systems Biology …, 2020 - search.proquest.com
… In this process, the mechanism of controlling cell-cycle … a hybrid stochastic model is developed
to study the effects of noise on the control mechanism of the budding yeast cell cycle. The …

A continuous-time stochastic Boolean model provides a quantitative description of the budding yeast cell cycle

T Laomettachit, P Kraikivski, JJ Tyson - Scientific Reports, 2022 - nature.com
… detailed stochastic simulations. Here we develop a continuous-time stochastic model using
… major regulators of the budding yeast cell cycle plus one continuous variable representing …

Yeast network and report of new stochastic-credibility cell cycle models

O Chis, O Dumitru, R Concu, B Shen - Current Bioinformatics, 2011 - ingentaconnect.com
… (hybrid process) is a mixture of randomness and fuzziness. We consider the study of a generic
cell cycle model for budding yeast, … Fuzzy random theory and random fuzzy theory can be …

A model of yeast cell-cycle regulation based on a standard component modeling strategy for protein regulatory networks

T Laomettachit, KC Chen, WT Baumann, JJ Tyson - PloS one, 2016 - journals.plos.org
mechanism of the budding yeast cell cycle, we illustrate the potential value of standard
component modeling. … , to illustrate the general principles of deterministic and stochastic modeling

A stochastic model of the yeast cell cycle reveals roles for feedback regulation in limiting cellular variability

D Barik, DA Ball, J Peccoud… - PLoS computational …, 2016 - journals.plos.org
… To assess the effects of noise on cell cyclemodels of stochastic fluctuations in the CDK
control system. In this paper we provide a stochastic model of the budding yeast cell cycle that …

Integrative analysis of cell cycle control in budding yeast

KC Chen, L Calzone, A Csikasz-Nagy… - … biology of the cell, 2004 - Am Soc Cell Biol
… Consensus model of the cell cycle control mechanism in budding yeast. (For a full
justification of this diagram, with references to the original literature, see our Web site at http://mpf.biol.…