[PDF][PDF] A machine-readable specification for genomics assays
AS Booeshaghi, X Chen, L Pachter - Bioinformatics, 2024 - academic.oup.com
AS Booeshaghi, X Chen, L Pachter
Bioinformatics, 2024•academic.oup.comMotivation Understanding the structure of sequenced fragments from genomics libraries is
essential for accurate read preprocessing. Currently, different assays and sequencing
technologies require custom scripts and programs that do not leverage the common
structure of sequence elements present in genomics libraries. Results We present seqspec,
a machine-readable specification for libraries produced by genomics assays that facilitates
standardization of preprocessing and enables tracking and comparison of genomics assays …
essential for accurate read preprocessing. Currently, different assays and sequencing
technologies require custom scripts and programs that do not leverage the common
structure of sequence elements present in genomics libraries. Results We present seqspec,
a machine-readable specification for libraries produced by genomics assays that facilitates
standardization of preprocessing and enables tracking and comparison of genomics assays …
Motivation
Understanding the structure of sequenced fragments from genomics libraries is essential for accurate read preprocessing. Currently, different assays and sequencing technologies require custom scripts and programs that do not leverage the common structure of sequence elements present in genomics libraries.
Results
We present seqspec, a machine-readable specification for libraries produced by genomics assays that facilitates standardization of preprocessing and enables tracking and comparison of genomics assays.
Availability and Implementation
The specification and associated seqspec command line tool is available at https://www.doi.org/10.5281/zenodo.10213865.
Contact and Supplementary Information
Direct inquires to corresponding authors. Supplementary Information is available online.
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