A web interface for easy flexible protein-protein docking with ATTRACT

SJ de Vries, CEM Schindler, IC de Beauchêne… - Biophysical journal, 2015 - cell.com
Biophysical journal, 2015cell.com
Protein-protein docking programs can give valuable insights into the structure of protein
complexes in the absence of an experimental complex structure. Web interfaces can
facilitate the use of docking programs by structural biologists. Here, we present an easy web
interface for protein-protein docking with the ATTRACT program. While aimed at nonexpert
users, the web interface still covers a considerable range of docking applications. The web
interface supports systematic rigid-body protein docking with the ATTRACT coarse-grained …
Abstract
Protein-protein docking programs can give valuable insights into the structure of protein complexes in the absence of an experimental complex structure. Web interfaces can facilitate the use of docking programs by structural biologists. Here, we present an easy web interface for protein-protein docking with the ATTRACT program. While aimed at nonexpert users, the web interface still covers a considerable range of docking applications. The web interface supports systematic rigid-body protein docking with the ATTRACT coarse-grained force field, as well as various kinds of protein flexibility. The execution of a docking protocol takes up to a few hours on a standard desktop computer.
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