… The analysis includes the presence or absence of the response along with … antibody response
when present. We evaluated plasma from 70 recent and 66 longstanding HIV-1 infections (…

… The analysis includes the presence or absence of the response along with … antibody response
when present. We evaluated plasma from 70 recent and 66 longstanding HIV-1 infections (…

… dynamics and binding free energy calculations. The calculations identified six molecules
exhibiting a high affinity to the HIV-1 … of gp120 critical for the HIV-1 binding to cellular receptor …

… a network analysis-based approach to identify potential … analyses of molecular dynamics
(MD) simulations identified a … that HIV-1 uses to shield vulnerable antibody targets in Env that …

… Here, we present an experimental and computational … in participant 1 (P1), we identified a
set of six spanning multiple cell … contains information on the sample preparation, antibodies, …

… for treatment and prevention of HIV-1 infections. Such … We identify two fitness factors, antibody
dosage and viral load, … Computational methods based on deep mutational scanning (18), …

… a novel computational tool (RAPR (Recombination Analysis … We identify recombination
hot and cold spots that differ from … in studies that looked at in vivo HIV-1 infection. PCR-derived …

… Laboratory assays for determining recent HIV-1 infection are of great public health … chronic
infection makes the antibody subclass an attractive biomarker for identifying recent infection. …

… by molecular dynamics simulations of the HIV-1-envelope … potent broadly neutralizing
antibodies thus far identified; despite … The computational time spent ~1 s with one core of CPU, 2.4 …

… After primary HIV-1 infection, a founding population of viruses and virus-infected cells is
rapidly established and expanded in various body compartments. The proviral landscape is …