Computational tool for the early screening of monoclonal antibodies for their viscosities

NJ Agrawal, B Helk, S Kumar, N Mody, HA Sathish… - MAbs, 2016 - Taylor & Francis
… Furthermore, because we compute SCM … viscosities of solutions of antibodies of similar
isotypes. In this study, we focus on IgG1 antibodies because most of the experimental viscosity

In-silico prediction of concentration-dependent viscosity curves for monoclonal antibody solutions

DS Tomar, L Li, MP Broulidakis, NG Luksha, CT Burns… - MAbs, 2017 - Taylor & Francis
computational tool may facilitate material-free high-throughput screening of antibody
candidates during earlyComputational tools for viscosity prediction of small molecules were …

Predictive modeling of concentration-dependent viscosity behavior of monoclonal antibody solutions using artificial neural networks

J Schmitt, A Razvi, C Grapentin - MAbs, 2023 - Taylor & Francis
… predict viscosity, experimental parameters, like the diffusion interaction parameter (kD), or
computational tools … Two graphs showing the differences in calculated compared to predicted …

Modeling and mitigation of high-concentration antibody viscosity through structure-based computer-aided protein design

JR Apgar, ASP Tam, R Sorm, S Moesta, AC King… - PLoS …, 2020 - journals.plos.org
… (1) Similar to the first round of designs, all potential mutations were computationally
screened for binding affinity and stability (S2 Table). (2) A set of positive charge introduction …

Reduction of monoclonal antibody viscosity using interpretable machine learning

EK Makowski, HT Chen, T Wang, L Wu, J Huang… - Mabs, 2024 - Taylor & Francis
… The strong model performance observed in Figures 4–6 motivated us to test if we could use
… other experimental or computational approaches for co-optimizing antibody properties that …

Discovery-stage identification of drug-like antibodies using emerging experimental and computational methods

EK Makowski, L Wu, P Gupta, PM Tessier - MAbs, 2021 - Taylor & Francis
… interest in developing monoclonal antibodies as therapeutic … in a second computational
approach to viscosity prediction … To broaden screening capabilities, computational tools have …

[HTML][HTML] Discovery of compounds with viscosity-reducing effects on biopharmaceutical formulations with monoclonal antibodies

…, M Zidar, B Lebar, N Strašek, G Miličić, A Žula… - Computational and …, 2022 - Elsevier
… To rationalize these results, we set filters for the next step of computational screening. Filtering
based on molecular descriptors such as the Lipinski rule-of-five is commonly used in drug …

Characterizing experimental monoclonal antibody interactions and clustering using a coarse-grained simulation library and a viscosity model

A Chowdhury, N Manohar, G Guruprasad… - The Journal of …, 2023 - ACS Publications
… involve thousands of mAbs, which is computationally infeasible for … Our findings are supported
by experiments showing … While early models such as the interacting hard sphere (IHS) …

… of in silico models to predict viscosity and mouse clearance using a comprehensive analytical data set collected on 83 scaffold-consistent monoclonal antibodies

M Mock, AW Jacobitz, CJ Langmead, A Sudom, D Yoo… - MAbs, 2023 - Taylor & Francis
… Furthermore, to complement our use of computational methods for structure prediction,
we … Median test metrics of viscosity binary classifiers. One hundred random stratified train-test

Machine learning prediction of antibody aggregation and viscosity for high concentration formulation development of protein therapeutics

PK Lai, A Gallegos, N Mody, HA Sathish, BL Trout - MAbs, 2022 - Taylor & Francis
… developability properties of monoclonal antibodies (mAbs), … Computational tools have been
applied to identify drug-like … showing the experimental viscosity at 150 mg/ml of 20 mAbs. …