… binding predictor because protein binding depends on the geometric shape of two proteins
[8]. In this work, we propose DSMBind, an unsupervised binding energy prediction … an energy-…

… In summary, DSMBind offers a versatile framework for binding energy prediction and binder
… In this work, we propose DSMBind, an unsupervised binding energy prediction framework …

… (DSM) to accurately learn the binding energy function. DualBind … More specifically, the
denoising score matching technique has … To facilitate a meaningful comparison with DSMBind, we …

… complexes using SE(3) denoising score matching (DSM) … unsupervised binding energy
prediction framework for small molecules and antibodies. The basic idea is to learn an energy-…

… , a commonly used binding energy dataset. We demonstrate … energy landscapes are
learned through unsupervised pre-… input backbone structure, while DSMBind [19] predicts muta…

… for zero-shot prediction of proteinprotein binding energy by carefully selecting the … DSMBind:
SE(3) denoising score matching for unsupervised binding energy prediction and nanobody …

… We introduce DFMDock (Denoising Force Matching Dock), a … DSMBind [29] adopts a similar
framework for protein-protein … energy function correlates more strongly with binding energy …

… Spearman coefficients of 0.3201 (unsupervised) and 0.5134 (… of our method on binding
energy prediction, protein-protein … DSMBind is an unsupervised method trained on 3,416 …

… fully unsupervised manner, NERE predicts absolute binding … single point mutations and
scored binding energy changes ∆∆G: … to train via denoising score matching and have the model …

… unsupervised learning. For example, DSMBind[15] and Yang et al’s deep neural network
energy … the stability of the entire structure or the binding energy, not the breakdown on a residue…