Detecting range expansions from genetic data

BM Peter, M Slatkin - Evolution, 2013 - academic.oup.com
BM Peter, M Slatkin
Evolution, 2013academic.oup.com
We propose a method that uses genetic data to test for the occurrence of a recent range
expansion and to infer the location of the origin of the expansion. We introduce a statistic ψ
(the directionality index) that detects asymmetries in the 2D allele frequency spectrum of
pairs of population. These asymmetries are caused by the series of founder events that
happen during an expansion and they arise because low frequency alleles tend to be lost
during founder events, thus creating clines in the frequencies of surviving low-frequency …
Abstract
We propose a method that uses genetic data to test for the occurrence of a recent range expansion and to infer the location of the origin of the expansion. We introduce a statistic ψ (the directionality index) that detects asymmetries in the 2D allele frequency spectrum of pairs of population. These asymmetries are caused by the series of founder events that happen during an expansion and they arise because low frequency alleles tend to be lost during founder events, thus creating clines in the frequencies of surviving low-frequency alleles. Using simulations, we show that ψ is more powerful for detecting range expansions than both and clines in heterozygosity. We also show how we can adapt our approach to more complicated scenarios such as expansions with multiple origins or barriers to migration and we illustrate the utility of ψ by applying it to a data set from modern humans.
Oxford University Press
以上显示的是最相近的搜索结果。 查看全部搜索结果