ESPript: analysis of multiple sequence alignments in PostScript.

P Gouet, E Courcelle, DI Stuart… - Bioinformatics (Oxford …, 1999 - academic.oup.com
P Gouet, E Courcelle, DI Stuart, FMé toz
Bioinformatics (Oxford, England), 1999academic.oup.com
Abstract MOTIVATION: The program ESPript (Easy Sequencing in PostScript) allows the
rapid visualization, via PostScript output, of sequences aligned with popular programs such
as CLUSTAL-W or GCG PILEUP. It can read secondary structure files (such as that created
by the program DSSP) to produce a synthesis of both sequence and structural information.
RESULTS: ESPript can be run via a command file or a friendly html-based user interface.
The program calculates an homology score by columns of residues and can sort this …
Abstract
MOTIVATION: The program ESPript (Easy Sequencing in PostScript) allows the rapid visualization, via PostScript output, of sequences aligned with popular programs such as CLUSTAL-W or GCG PILEUP. It can read secondary structure files (such as that created by the program DSSP) to produce a synthesis of both sequence and structural information. RESULTS: ESPript can be run via a command file or a friendly html-based user interface. The program calculates an homology score by columns of residues and can sort this calculation by groups of sequences. It offers a palette of markers to highlight important regions in the alignment. ESPript can also paste information on residue conservation into coordinate files, for subsequent visualization with a graphics program. AVAILABILITY: ESPript can be accessed on its Web site at http://www.ipbs.fr/ESPript. Sources and helpfiles can be downloaded via anonymous ftp from ftp.ipbs.fr. A tar file is held in the directory pub/ESPript.
Oxford University Press
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