Errors in genome annotation

SE Brenner - Trends in Genetics, 1999 - cell.com
… SWISS-PROT annotation of the same … annotations are included, the minimum annotation
error rate drops only to 6%. All annotations were collected in 1996, shortly after the genome

Intrinsic errors in genome annotation

D Devos, A Valencia - TRENDS in Genetics, 2001 - cell.com
… We counted the number of discrepancies in the annotation of well-established sets of … the
annotation of different microbial genomes. We conclude that the number of potential errors in …

Genome annotation and analysis

EV Koonin, MY Galperin, EV Koonin… - … Comparative Genomics, 2003 - Springer
… , we encountered all the main sources of systematic error in genome annotation. We list
them here again, more or less in the order of decreasing severity, as we see it: (i) spurious …

Gene annotation errors are common in the mammalian mitochondrial genomes database

CF Prada, JL Boore - BMC genomics, 2019 - Springer
errors of annotation, we performed a comparative genomic analysis of mammalian mitochondrial
genomesErrors in genome annotation may be extensive, not only among the 9000 …

Genome annotation errors in pathway databases due to semantic ambiguity in partial EC numbers

ML Green, PD Karp - Nucleic acids research, 2005 - academic.oup.com
… type of systematic annotation error in genome and … error results in the assignment of genes
annotated with a partial EC number to many or all biochemical reactions that are annotated

Estimating the annotation error rate of curated GO database sequence annotations

CE Jones, AL Brown, U Baumann - BMC bioinformatics, 2007 - Springer
annotation error rate and sequence-match annotation precision. To do this we will add
annotation errors to reference sequence annotations at … precision and annotation error rate by …

Toward a standard in structural genome annotation for prokaryotes

HJ Tripp, G Sutton, O White, J Wortman, A Pati… - Standards in genomic …, 2015 - Springer
genomes are likely to have more total errors, and genomes with more peptides are more
likely to have detectable errors. … structural annotation by carefully selecting an unbiased set of …

Annotation error in public databases: misannotation of molecular function in enzyme superfamilies

AM Schnoes, SD Brown, I Dodevski… - PLoS computational …, 2009 - journals.plos.org
… Two important papers examining genome annotation error in one and three small genomes
… In this work, we have investigated the prevalence of annotation error in several large public …

Genome annotation

S Aubourg, P Rouzé - Plant physiology and biochemistry, 2001 - Elsevier
… Furthermore, the limits and errors of these annotations are highlighted in order to use the
sequence databases at their best and to consider some novel approaches to deepen the …

Predicting Shine–Dalgarno sequence locations exposes genome annotation errors

J Starmer, A Stomp, M Vouk… - PLoS computational …, 2006 - journals.plos.org
… sequences than previous methods and many potential annotation errors. Our method could
be used to enhance genome annotation quality by accurately locating SD sequences with …