GARD: a genetic algorithm for recombination detection

SL Kosakovsky Pond, D Posada, MB Gravenor… - …, 2006 - academic.oup.com
algorithms and software tools for detection of recombination … —Genetic Algorithm
Recombination Detection (GARD)—to … sequences involved in putative recombination events. …

Automated phylogenetic detection of recombination using a genetic algorithm

SL Kosakovsky Pond, D Posada… - Molecular biology …, 2006 - academic.oup.com
… —Genetic Algorithm Recombination Detection—or GARD for short, to rapidly screen
multiple-sequence alignments for recombination. … We propose a genetic algorithm (GA) heuristic to …

[PDF][PDF] GARD: A Genetic Algorithm for Recombination Detection

SLK Ponda, D Posadab, MB Gravenorc, CH Woelka… - 2006 - researchgate.net
algorithms and software tools for detection of recombination … - Genetic Algorithm Recombination
Detection (GARD) - to … recombination events. Using simulated and biological data sets …

Recombination detection under evolutionary scenarios relevant to functional divergence

RA Bay, JP Bielawski - Journal of Molecular Evolution, 2011 - Springer
… Finally, we apply the same set of recombination detection methods to a set of genes from the
core genome of the … algorithm. GARD-MBP employs a genetic algorithm to identify multiple …

Exploring the accuracy and limits of algorithms for localizing recombination breakpoints

S Cen, DA Rasmussen - Molecular Biology and Evolution, 2024 - academic.oup.com
… For example, Genetic Algorithm Recombination Detection (GARD) iteratively divides a …
We conclude that among the three detection methods, GARD is more sensitive at detecting

Identification of potential recombination breakpoints in human parechoviruses

J Zoll, JMD Galama, FJM van Kuppeveld - Journal of virology, 2009 - Am Soc Microbiol
… With a genetic algorithm for recombination detection, sites for recombination were found. …
By using GARD on a set of complete genome sequences of HPeVs, we found three major …

Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology

W Delport, AFY Poon, SDW Frost… - …, 2010 - academic.oup.com
… This component executes a genetic algorithm (GA) search for lineages that are subject to …
recombination detection (GARD) are a highly sensitive and accurate approach for screening

Evidence of recombination in Hepatitis C Virus populations infecting a hemophiliac patient

P Moreno, M Alvarez, L López, G Moratorio, D Casane… - Virology Journal, 2009 - Springer
GARD to determine the presence of possible recombination break-points [27]. A recombination
… To detect possible HCV recombinant strain sequences, we used Genotyping Tool at the …

[HTML][HTML] Genetic diversity of a natural population of Apple stem pitting virus isolated from apple in Korea

JY Yoon, JH Joa, K San Choi, KS Do… - The plant pathology …, 2014 - ncbi.nlm.nih.gov
Genetic algorithm recombination detection (GARD) and single breakpoint recombination (SBP)
analyses identified base substitutions between eight ASPV isolates at positions 54 and …

Isolation of serotype 2 porcine teschovirus in China: evidence of natural recombination

B Wang, ZJ Tian, DQ Gong, DY Li, Y Wang… - Veterinary …, 2010 - Elsevier
… Putative recombinantrecombination event in PTV. Then the mosaic structure of viral
genome was confirmed by bootscanning and genetic algorithm for recombination detection (GARD). …