GenArk: towards a million UCSC genome browsers

H Clawson, BT Lee, BJ Raney, GP Barber, J Casper… - Genome Biology, 2023 - Springer
Interactive graphical genome browsers are essential tools in genomics, but they do not
contain all the recent genome assemblies. We create Genome Archive (GenArk) collection
of UCSC Genome Browsers from NCBI assemblies. Built on our established track hub
system, this enables fast visualization of annotations. Assemblies come with gene models,
repeat masks, BLAT, and in silico PCR. Users can add annotations via track hubs and
custom tracks. We can bulk-import third-party resources, demonstrated with TOGA and …

GenArk: towards a million UCSC genome browsers.

B Lee, B Raney, G Barber, J Casper, M Diekhans… - Genome …, 2023 - escholarship.org
Interactive graphical genome browsers are essential tools in genomics, but they do not
contain all the recent genome assemblies. We create Genome Archive (GenArk) collection
of UCSC Genome Browsers from NCBI assemblies. Built on our established track hub
system, this enables fast visualization of annotations. Assemblies come with gene models,
repeat masks, BLAT, and in silico PCR. Users can add annotations via track hubs and
custom tracks. We can bulk-import third-party resources, demonstrated with TOGA and …
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