… large number of redundant placements in complex genomes, large differences in library
populations if multiple … methods, where gene transcripts are represented by multiple alignments. …

… Sequencing of PEs with variable intervening distances should facilitate defining how
multiple transcript … , are combined within individual transcripts. Moreover, systems currently in …

… each full-length transcript were simultaneously extracted… high-throughput sequencing and
the accurate demarcation of transcriptional unit boundaries in assembled genome sequences …

… many of which are tissue specific. By combining mRNA-Seq and EST-cDNA sequence data,
we estimate that transcripts … ∼100,000 intermediate- to high-abundance alternative splicing …

… These methods not only identify RNA polymerase II‐bound transcripts but also the direction
of transcription and its rate of decay. These efforts have revealed promoter‐proximal pausing …

… a small component of antisense viral transcription. Of the detected cellular transcripts, 826
(2.3%… We observed very active transcription of these elements, with 1 transcript in 237 being of …

… examination of annotated transcripts yielded a comprehensive collection of unique transcripts
from 35,123 transcript clusters (genes). Comparisons of these unique transcripts defined a …

… can be used to determine which mRNA transcripts are … By sequencing multiple genomes,
it is therefore, possible to … project 6 have used many of the high throughput sequencing (HTS) …

… , followed recently by the Sequel, which carries several modifications and improvements of
the original technology that result in higher throughput. The number of ZMWs increased from …

… For each site along the transcript, we counted how many reads begin there and how many
trim reads (Supplementary Notes 1 and 2) end there, summing them to get counts of observed …