High-resolution interrogation of functional elements in the noncoding genome

NE Sanjana, J Wright, K Zheng, O Shalem… - Science, 2016 - science.org
… systematic dissection of noncoding loci can identify functional elements involved in gene
regulation and cancer drug resistance. In combination with other genome-wide assays, we …

Functional interrogation of non-coding DNA through CRISPR genome editing

MC Canver, DE Bauer, SH Orkin - Methods, 2017 - Elsevier
genome, it lacks mRNA and protein production as functional … and identify functional
elements within the non-coding genome … /GOF with genomic modification High High High-resolution, …

Characterization of noncoding regulatory DNA in the human genome

R Elkon, R Agami - Nature biotechnology, 2017 - nature.com
… The functional noncoding genome can be broadly divided into cis-regulatory DNA elements
High-resolution interrogation of functional elements in the nongenome. Science 353, 1545–…

High-resolution targeted 3C interrogation of cis-regulatory element organization at genome-wide scale

DJ Downes, RA Beagrie, ME Gosden… - Nature …, 2021 - nature.com
… By pairing high-resolution 3C interaction calls with nascent gene expression we interrogate
the … , as DpnII fragments are less likely to contain multiple functional elements than HindIII …

[HTML][HTML] Exploring noncoding variants in genetic diseases: from detection to functional insights

K Wu, F Bu, Y Wu, G Zhang, X Wang, S He… - … Genetics and Genomics, 2024 - Elsevier
noncoding regions introduce a multitude of challenges and research opportunities. In this
review, we introduce a spectrum of noncoding … complexity of the noncoding genome. We will …

CRISPR screens to discover functional noncoding elements

JB Wright, NE Sanjana - Trends in Genetics, 2016 - cell.com
A major challenge in genomics is to identify functional elements in the noncoding genome. …
) mutagenesis screens of noncoding regions have emerged as a novel method for finding …

Technologies to probe functions and mechanisms of long noncoding RNAs

C Chu, RC Spitale, HY Chang - Nature structural & molecular biology, 2015 - nature.com
… methods to interrogate the intrinsic structure of lncRNAs as well as their genomic localization
and … Understanding the functional elements of lncRNAs may allow lncRNA functions to be …

Understanding the functions of long non-coding RNAs through their higher-order structures

R Li, H Zhu, Y Luo - International journal of molecular sciences, 2016 - mdpi.com
… Compared with the previously described approaches, this method, which does not involve
RNA denaturation and affinity tag design, not only preserves lncRNA functional elements but …

High-resolution interrogation of functional elements in the noncoding genome

J Wright, K Zheng, O Shalem - Science, 2016 - dialnet.unirioja.es
noncoding genome affects gene regulation and disease, yet we lack tools for rapid identification
and manipulation of noncoding elements… We find that noncoding locations that modulate …

Identification of non-coding silencer elements and their regulation of gene expression

B Pang, JH van Weerd, FL Hamoen… - … Reviews Molecular Cell …, 2023 - nature.com
… within the non-coding part of the genome, potentially … functional annotation of NCREs is a
major driver of genome research. Compared with our knowledge of other regulatory elements, …