Channel estimation is always implemented in communication systems to overcome the effect of interference and noise. Especially, in wireless communications, this task is more challenging to improve system performance while saving resources. This paper focuses on investigating the impact of geometries of antenna arrays on the performance of structured channel estimation in massive MIMO-OFDM systems. We use Cramér Rao Bound to analyze errors in two methods, i.e., training-based and semi-blind-based channel estimations. The simulation results show that the latter gets significantly better performance than the former. Besides, the system with Uniform Cylindrical Array outperforms the traditional Uniform Linear Array one in both estimation methods.