Impact of dominance effects on autotetraploid genomic prediction

RR Amadeu, LFV Ferrão, IB Oliveira… - Crop …, 2020 - Wiley Online Library
… a higher impact on the prediction of genetic values. … dominance effects in the prediction of
genotypic values for complex traits in autotetraploid species in the context of genomic selection

Genomic prediction with allele dosage information in highly polyploid species

LG Batista, VH Mello, AP Souza… - Theoretical and Applied …, 2022 - Springer
… methodology used for genomic selection in autotetraploid to higher (… dominance effects that
are subsequently used in genomic … population) to predict the effect of genetic markers widely …

Genomic prediction of autotetraploids; influence of relationship matrices, allele dosage, and continuous genotyping calls in phenotype prediction

I de Bem Oliveira, MFR Resende Jr… - … : Genes, Genomes …, 2019 - academic.oup.com
… To quantify the effect of the genetic information used to build … the genotypic values in
autotetraploid species (Table 1, File … consider dominance effects, dosage calling is still necessary. …

Optimizing whole-genomic prediction for autotetraploid blueberry breeding

I de Bem Oliveira, RR Amadeu, LFV Ferrão, PR Muñoz - Heredity, 2020 - nature.com
autopolyploid study has yet investigated the influence of sequencing depth on genomic
prediction. … , we propose to investigate the impact of sequencing depth on prediction for three fruit …

Impact of accounting for allele dosage on genomic prediction in a simulated autopolyploid sturgeon population

H Song, H Hu - Aquaculture, 2022 - Elsevier
… in genomic prediction models promoted approximately 5.1% and 13.0% genomic prediction
accuracy in tetraploid … GBLUP and RKHS models showed superiority over BLUP model, and …

Genetic variance partitioning and genome-wide prediction with allele dosage information in autotetraploid potato

JB Endelman, CAS Carley, PC Bethke, JJ Coombs… - Genetics, 2018 - academic.oup.com
Genomic predictions for each F 1 population were calculated … dominance, and epistatic
random effects. We interpret the residual genetic effect to include higher-order nonadditive effects

Prospects and potential uses of genomic prediction of key performance traits in tetraploid potato

B Stich, D Van Inghelandt - Frontiers in plant science, 2018 - frontiersin.org
… , considering dominance effects in the genomic prediction … the effect of different factors (F)
on genomic prediction: (F1) the … was varied; (F3) the effect of “reduced” relationship between …

Genomic selection in an outcrossing autotetraploid fruit crop: lessons from blueberry breeding

LFV Ferrão, RR Amadeu, J Benevenuto… - Frontiers in plant …, 2021 - frontiersin.org
dominance effects; … impact of genomic selection on leveraging breeding decisions by using
an independent validation set. Altogether, we propose a strategy for using genomic selection

Understanding the effectiveness of genomic prediction in tetraploid potato

S Wilson, C Zheng, C Maliepaard, HA Mulder… - Frontiers in Plant …, 2021 - frontiersin.org
… which effect, additive, dominance, or the effect of … For predicting tuber count, extending the
additive GBLUP model to include dominance effects improved the accuracy of prediction by 17…

Increasing genomic prediction accuracy for unphenotyped full-sib families by modeling additive and dominance effects with large datasets in white spruce

S Nadeau, J Beaulieu, SA Gezan, M Perron… - Frontiers in Plant …, 2023 - frontiersin.org
Frontiers | Increasing genomic prediction accuracy for unphenotyped full-sib families by
modeling additive and dominance effects with large datasets in white spruce Skip to main …