Improved lower bounds for constant GC-content DNA codes

YM Chee, S Ling - IEEE Transactions on Information Theory, 2008 - ieeexplore.ieee.org
… necessary for reducing hybridization errors. With this new algorithm, we were able to
improve on many of the benchmark lower bounds for DNA codes in [10]. The sizes of optimal …

[PDF][PDF] Improved lower bounds for constant GC-content DNA

YM Chee, S Ling - 2008 - Citeseer
… Our approach starts with a small DNA code and progressively moves it toward a DNA code
improve on many of the benchmark lower bounds for DNA codes in [10]. The sizes of optimal …

[HTML][HTML] Improved lower bounds of DNA tags based on a modified genetic algorithm

B Wang, X Wei, J Dong, Q Zhang - PloS one, 2015 - journals.plos.org
codes. The existing tag sets contain small tag sequences, so we used a modified genetic
algorithm to improve the lower bound … Thus, we improved the GC content determination method …

[HTML][HTML] Linear and nonlinear constructions of DNA codes with Hamming distance d and constant GC-content

DH Smith, N Aboluion, R Montemanni, S Perkins - Discrete mathematics, 2011 - Elsevier
… As the actual value of w is unimportant, the aim of the paper is to improve lower bounds
for max w ( A 4 G C ( n , d , w ) ) . The maximum often occurs for w = ⌊ n / 2 ⌋ , but there are …

Construction of constant GC-content DNA codes via a variable neighbourhood search algorithm

R Montemanni, DH Smith - Journal of Mathematical Modelling and …, 2008 - Springer
… find DNA codes with the maximum number of codewords. In this paper the construction of DNA
codes … to match or improve the best known lower bounds in 180 cases, with 52 new bests. …

[HTML][HTML] Three metaheuristics for the construction of constant GC-content DNA codes

R Montemanni, DH Smith, N Koul - Lecture Notes in Management …, 2014 - books.google.com
… Entries in bold are new best lower bounds found by the … constructions of DNA codes with
constant GC-content. Discrete … neighbourhoods improve stochastic local search for DNA code

DNA codes with constant GC-content constructed from Hadamard matrices

YS Kim, H Park, SH Kim - IEICE Transactions on Fundamentals of …, 2017 - search.ieice.org
… From now on, we will prove that the proposed DNA codes indeed have constant GC-content
and derive the minimum Hamming distance dmin of the DNA codes from Construction 1. …

The GC-content of a family of cyclic codes with applications to DNA-codes

J Sangroniz, L Martínez - arXiv preprint arXiv:1903.03535, 2019 - arxiv.org
GC-content, we’ll prefer to call this number the Fq-weight of the word. As an immediate
consequence a general lower bound … -codes for n = 13 and 29, we obtain the improved bounds

New construction of DNA codes with constant-GC contents from binary sequences with ideal autocorrelation

YS Kim, SH Kim - 2011 IEEE International Symposium on …, 2011 - ieeexplore.ieee.org
… , we are construct a new DNA code with constant GC-content from a binary constant weight
… Ling, “Improved lower bounds for constant GCcontent DNA codes,” IEEE Trans. Inf. Theory, …

Bounds for DNA codes with constant GC-content

OD King - arXiv preprint math/0306197, 2003 - arxiv.org
… and lower bounds on the maximum size of DNA codes of length n with constant GC-content
w … meet or exceed Gilbert-type lower bounds; they often do much better [6]. There are many …