Maximizing binary interactome mapping with a minimal number of assays

SG Choi, J Olivet, P Cassonnet, PO Vidalain… - Nature …, 2019 - nature.com
binary protein-protein interaction (PPI) mapping based on optimally combining assays and/or
assay versions to maximize … recovers as many PPIs as 10 distinct assays combined. Thus, …

A reference map of the human binary protein interactome

K Luck, DK Kim, L Lambourne, K Spirohn, BE Begg… - Nature, 2020 - nature.com
… To maximize sensitivity we used three Y2H assay versions (Fig. 1b, Supplementary Tables
3, 4) that showed good sensitivity and low false-positive rates when benchmarked against …

[PDF][PDF] Maximizing binary interactome mapping with a minimal number of assays

K Luck, L Lambourne, K Spirohn, I Lemmens… - edoc.mdc-berlin.de
binary protein-protein interaction (PPI) mapping based on optimally combining assays and/or
assay versions to maximize … recovers as many PPIs as 10 distinct assays combined. Thus, …

CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping

SA Wanamaker, RM Garza, A MacWilliams, JR Nery… - Nature …, 2017 - nature.com
… By performing ten independent screens testing a total of 36 million binary interaction
maximizing for the number of positively scoring known interactions and minimizing for the number

[HTML][HTML] Next-generation large-scale binary protein interaction network for Drosophila melanogaster

HW Tang, K Spirohn, Y Hu, T Hao, IA Kovács… - Nature …, 2023 - nature.com
interaction pairs in assay version 1, screen 1; 1029 in assay … approaches to binary interaction
mapping, together with … a next-generation reference binary interactome for Drosophila. The …

Uncovering Arabidopsis Membrane Protein Interactome Enriched in Transporters Using Mating-Based Split Ubiquitin Assays and Classification Models

J Chen, S Lalonde, P Obrdlik… - Frontiers in Plant …, 2012 - frontiersin.org
… The large number of assays that need to be performed to … , followed by maximizing the
number of interaction assays. … interactions to a more rigorous interaction testing. For the decision …

A systematic approach to identify host targets and rapidly deliver broad-spectrum antivirals

J Olivet, SB Maseko, AN Volkov, K Salehi-Ashtiani… - Molecular Therapy, 2022 - cell.com
… To systematically map direct virus-host PPIs with binary interaction assays, two strategies
can be applied in … Maximizing binary interactome mapping with a minimal number of assays. …

Accurate and sensitive interactome profiling using a quantitative protein-fragment complementation assay

N Lazarewicz, G Le Dez, R Cerjani, L Runeshaw… - Cell Reports …, 2024 - cell.com
interactome. Typically, when performed under conditions that limit the detection of negative
control proteins, state-of-the-art binary PPI assays … threshold that maximizes the detection of …

The IMEx coronavirus interactome: an evolving map of Coronaviridae–host molecular interactions

L Perfetto, C Pastrello, N Del-Toro, M Duesbury… - Database, 2020 - academic.oup.com
… spoke-expanded binary relationships. Dots represent the date when the interaction was
curated. (B) Amount of cumulative experimental evidence associated with unique binary pairs, …

Protein-fragment complementation assays for large-scale analysis of protein–protein interactions

E Blaszczak, N Lazarewicz, A Sudevan… - Biochemical Society …, 2021 - portlandpress.com
… This indicates that PCAs interrogate a different space of the interactome than biochemical
and Y2H assays and highlights the need of using complementary approaches for PPI mapping