Medmnist classification decathlon: A lightweight automl benchmark for medical image analysis

J Yang, R Shi, B Ni - 2021 IEEE 18th International Symposium …, 2021 - ieeexplore.ieee.org
2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), 2021ieeexplore.ieee.org
We present MedMNIST, a collection of 10 pre-processed medical open datasets. MedMNIST
is standardized to perform classification tasks on lightweight 28 x 28 images, which requires
no background knowledge. Covering the primary data modalities in medical image analysis,
it is diverse on data scale (from 100 to 100,000) and tasks (binary/multi-class, ordinal
regression and multi-label). MedMNIST could be used for educational purpose, rapid
prototyping, multi-modal machine learning or AutoML in medical image analysis. Moreover …
We present MedMNIST, a collection of 10 pre-processed medical open datasets. MedMNIST is standardized to perform classification tasks on lightweight 28 x 28 images, which requires no background knowledge. Covering the primary data modalities in medical image analysis, it is diverse on data scale (from 100 to 100,000) and tasks (binary/multi-class, ordinal regression and multi-label). MedMNIST could be used for educational purpose, rapid prototyping, multi-modal machine learning or AutoML in medical image analysis. Moreover, MedMNIST Classification Decathlon is designed to benchmark AutoML algorithms on all 10 datasets; We have compared several baseline methods, including open-source or commercial AutoML tools. The datasets, evaluation code and baseline methods for MedMNIST are publicly available at https://medmnist.github.io/.
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