Modeling and simulation using CellDesigner
Y Matsuoka, A Funahashi, S Ghosh… - … factor regulatory networks …, 2014 - Springer
Transcription factor regulatory networks: Methods and protocols, 2014•Springer
… In this chapter, we explain how to build a model and run the simulation using
CellDesigner, adopting the standards such as SBML and SBGN. … In this chapter, we use
CellDesigner TM [5–7] as a tool to demonstrate two aspects of modeling, depicting
mechanism, and dynamics of the model. CellDesigner has been used for large-scale
comprehensive pathway maps for Epidermal growth factor receptor (EGFR) [8], Toll-like
receptor (TLR) [9], Yeast Cell Cycle [10], and mammalian target of rapamycin (mTOR) [11]. It …
CellDesigner, adopting the standards such as SBML and SBGN. … In this chapter, we use
CellDesigner TM [5–7] as a tool to demonstrate two aspects of modeling, depicting
mechanism, and dynamics of the model. CellDesigner has been used for large-scale
comprehensive pathway maps for Epidermal growth factor receptor (EGFR) [8], Toll-like
receptor (TLR) [9], Yeast Cell Cycle [10], and mammalian target of rapamycin (mTOR) [11]. It …
Abstract
In silico modeling and simulation are effective means to understand how the regulatory systems function in life. In this chapter, we explain how to build a model and run the simulation using CellDesigner, adopting the standards such as SBML and SBGN.
Springer
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