Suspended particulate matter (SPM) fluxes and dynamics are investigated in the East Frisian Wadden Sea using a coupled modeling system based on a hydrodynamical model [the General Estuarine Transport Model (GETM)], a third-generation wave model [Simulating Waves Nearshore (SWAN)], and a SPM module attached to GETM. Sedimentological observations document that, over longer time periods, finer sediment fractions disappear from the Wadden Sea Region. In order to understand this phenomenon, a series of numerical scenarios were formulated to discriminate possible influences such as tidal currents, wind-enhanced currents, and wind-generated surface waves. Starting with a simple tidal forcing, the considered scenarios are designed to increase the realism step by step to include moderate and strong winds and waves and, finally, to encompass the full effects of one of the strongest storm surges affecting the region in the last hundred years (Storm Britta in November 2006). The results presented here indicate that moderate weather conditions with wind speeds up to 7.5 m/s and small waves lead to a net import of SPM into the East Frisian Wadden Sea. Waves play only a negligible role during these conditions. However, for stronger wind conditions with speeds above 13 m/s, wind-generated surface waves have a significant impact on SPM dynamics. Under storm conditions, the numerical results demonstrate that sediments are eroded in front of the barrier islands by enhanced wave action and are transported into the back-barrier basins by the currents. Furthermore, sediment erosion due to waves is significantly enhanced on the tidal flats. Finally, fine sediments are flushed out of the tidal basins due to the combined effect of strong erosion by wind-generated waves and a longer residence time in the water column because of their smaller settling velocities compared to coarser sediments.