Non-proline cis peptide bonds in proteins

A Jabs, MS Weiss, R Hilgenfeld - Journal of molecular biology, 1999 - Elsevier
proteins containing non-proline cis peptide bonds are carbohydrate-binding or processing
proteins… The 34 proteins containing the total of 43 non-Pro cis peptide bonds found in our 25 …

Cis peptide bonds in proteins: residues involved, their conformations, interactions and locations

D Pal, P Chakrabarti - Journal of molecular biology, 1999 - Elsevier
… A comparison of cis peptides containing proline and non-proline residues show differences
in conformation, location in the secondary structure and in relation to the centre of the …

[HTML][HTML] Two non-proline cis peptide bonds may be important for factor XIII function

MS Weiss, HJ Metzner, R Hilgenfeld - FEBS letters, 1998 - Elsevier
… Based on our results, we propose that the protein has an … have discovered two non-proline
cis peptide bonds in peculiar … the cis/trans isomerization of the non-proline cis peptide bonds. …

Extraction of consensus protein patterns in regions containing non-proline cis peptide bonds and their functional assessment

KP Exarchos, TP Exarchos, G Rigas, C Papaloukas… - BMC …, 2011 - Springer
cis-nonPro peptide bond in the above protein sequences, we assembled a window of neighboring
residues (± 5) which influences significantly the peptide bond … -nonPro peptide bonds, …

Conformational and electronic study of cis-peptides (non-proline residues) occurring in natural proteins

LJ Gutierrez, HA Baldoni, RD Enriz - Journal of Molecular Structure, 2009 - Elsevier
… study of cis-peptide bonds of non-prolyl residues occurring in natural proteins. The
present study aims to explore, characterize and present the geometric preferences of four cis-…

Detecting proline and non-proline cis isomers in protein structures from sequences using deep residual ensemble learning

J Singh, J Hanson, R Heffernan, K Paliwal… - Journal of chemical …, 2018 - ACS Publications
… in protein structure. Because of this rarity, few methods have been developed for predicting
cis isomers from protein … -resolution protein structures, we update the statistics of cis isomers …

Identifying the protonation site and the scope of non-proline cis-peptide bond conformations: a first-principles study on protonated oligopeptides

R Xiong, L Xu, Y Tang, M Cao, H Li - Physical Chemistry Chemical …, 2023 - pubs.rsc.org
… The existence of such cis-peptide bond conformation was evidently confirmed by following
… Although the non-proline cis-peptide bonds are extremely scarce in protein or oligopeptides (…

[PDF][PDF] Study of Non-Proline cis Peptide Planes in Different Protein Framings

Y Hou, J Dai, AJ Niemi, X Peng, J He… - In cooperation with and …, 2018 - parallel.bas.bg
… on the planar character of the peptide bond, we introduce an … We focus on these relatively
rare cis peptide plane … the structures that exhibit cis X-Xnp peptide plane, where X denotes any …

Intrinsic protein geometry with application to non-proline cis peptide planes

Y Hou, J Dai, J He, AJ Niemi, X Peng… - Journal of Mathematical …, 2019 - Springer
… We show that the native peptide plane framing allows for … anomalies around their non-proline
cis peptide planes within the … out of in total 118,226 peptide bonds present in the ultrahigh-…

Structural mechanism governing cis and trans isomeric states and an intramolecular switch for cis/trans isomerization of a non-proline peptide bond observed in …

RJ Guan, Y Xiang, XL He, CG Wang, M Wang… - Journal of molecular …, 2004 - Elsevier
… have revealed the occurrence and biological importance of non-proline cis peptide bonds
in protein structures. Detailed analyses of the conformational characteristics and functional …