[HTML][HTML] Novel ligand-based docking; molecular dynamic simulations; and absorption, distribution, metabolism, and excretion approach to analyzing potential …

S Vijayakumar, P Manogar, S Prabhu… - Journal of Pharmaceutical …, 2018 - Elsevier
… we performed critical analyses such as molecular docking; molecular dynamic (MD) simulations;
… In the docking studies, the natural compound rutin showed a superior docking score of −…

[HTML][HTML] Ligand-based pharmacophore modeling, virtual screening and molecular docking studies for discovery of potential topoisomerase I inhibitors

S Pal, V Kumar, B Kundu, D Bhattacharya… - Computational and …, 2019 - Elsevier
… structurally diverse novel chemical entity as Top1 poison with better efficacy, Ligand-based-…
The molecule obtained after filtration was further scrutinized by molecular docking analysis …

Structure and ligand based drug design strategies in the development of novel 5-LOX inhibitors

P Aparoy, K Kumar Reddy… - Current medicinal …, 2012 - ingentaconnect.com
… 5-LOX inhibitors have mostly relied on ligand based rational approaches. The present …
docking with already reported inhibitors and further calculated relative binding energies of docked

Ligand docking and structure-based virtual screening in drug discovery

CN Cavasotto, AJ W Orry - Current topics in medicinal chemistry, 2007 - ingentaconnect.com
… on docking methods). The main advantages of structure-based screening to ligand-based
Researchers at Merck [54] have used docking to develop a novel series of potent glycogen …

HybridDock: a hybrid protein–ligand docking protocol integrating protein-and ligand-based approaches

SY Huang, M Li, J Wang, Y Pan - Journal of Chemical Information …, 2016 - ACS Publications
… not find novel compounds as potential leads. Another limitation for ligand-based screening
is … Given their different advantages, both protein-based docking and ligand-based similarity …

Ligand-based approach for predicting drug targets and for virtual screening against COVID-19

Y Yang, Z Zhu, X Wang, X Zhang, K Mu… - Briefings in …, 2021 - academic.oup.com
… to docking-based methods for ligand-based target … to docking-based methods for virtual
screening and target identification of potential coronavirus antivirals. We hope this ligand-based

Ligand-based drug design and molecular docking simulation studies of some novel anticancer compounds on MALME-3M melanoma cell line

AB Umar, A Uzairu, GA Shallangwa, S Uba - Egyptian Journal of Medical …, 2021 - Springer
Ligand-based is one of the most widely practiced approaches in drug discovery and drug
design by medicinal chemists. The ligand-based … and the molecular docking simulation method …

LigandFit: a novel method for the shape-directed rapid docking of ligands to protein active sites

CM Venkatachalam, X Jiang, T Oldfield… - Journal of Molecular …, 2003 - Elsevier
… It can be seen in Table 2 that in the case of 1ELA, the rigid docking of the X-ray ligand to
the X-ray ligand-based site yields a high RMS of 4.83 Å, and this is also the result of a similar …

Ligand-based pharmacophore detection, screening of potential gliptins and docking studies to get effective antidiabetic agents

R Agrawal, P Jain… - Combinatorial chemistry & …, 2012 - ingentaconnect.com
ligand-based pharmacophore detection method. The present work elaborates the Ligand
based … various FDA approved Gliptin molecules to find novel potential DPP-IV inhibitor. Some …

Structure-based and ligand-based virtual screening of novel methyltransferase inhibitors of the dengue virus

SV Lim, MBA Rahman, BA Tejo - BMC bioinformatics, 2011 - Springer
… We performed molecular docking on 500 compounds obtained from the ligand-based
EDULISS screen. These 500 compounds were ranked based on their binding affinities. The top …