Polycyclic aromatic hydrocarbons (PAHs) have posed serious risk to marine ecosystems due to their carcinogenic properties, and persistence in the environment and elevated bioaccumulation. It, therefore, becomes essential to examine spatial distribution, composition, and sources of PAHs. In this study, we have examined these PAH variations in the South China Sea (SCS) and East China Sea (ECS), that are experiencing rapid population and economic growth by the surrounding developing countries. It revealed high seasonal variations that significantly differ between dissolved and particulate PAHs concentrations. Spatial variations of PAHs across sites remain relatively insignificant. Persistently high particulate concentrations of the Naphthalene (Nap) were observed, whereas the dissolved concentrations of Fluorene (Flu) and Phenanthrene (Phen) remained prevalent across all the seasons. The result of non-metric multidimensional scaling (NMDS) strongly reflects the weak dispersions of PAHs across the seasons and the contrasting effects of the phase partitioning. Principal component analysis indicates that the primary source of PAH contamination is coal tar or petroleum distillation. However, estimated risk quotient (RQ) values of both the dissolved and particulate PAHs in all the seasons are far below the high-risk levels, while dissolved PAHs displayed relatively higher values. This study signifies the importance of phase petitioning for PAHs monitoring and potential risk assessments.