Predictive coarse-graining

M Schöberl, N Zabaras, PS Koutsourelakis - Journal of Computational …, 2017 - Elsevier
… framework is provided in Section 3 where coarse-graining efforts for an Ising lattice system
… results on the predictive uncertainty as a function of the level of coarse graining, and the …

Perspective: Advances, challenges, and insight for predictive coarse-grained models

WG Noid - The Journal of Physical Chemistry B, 2023 - ACS Publications
… progress around the basic theory for coarse-graining. In so doing, we hope to clarify the
fundamental origin of challenges that arise in systematic coarse-graining. Moreover, we hope to …

Electronic coarse graining: Predictive atomistic modeling of condensed matter

FS Cipcigan, J Crain, VP Sokhan, GJ Martyna - Reviews of Modern Physics, 2019 - APS
… This image focuses on electronic coarse graining occupying … We will develop the rationale
for efficient, predictive models … vastly improved transferability and predictive value, including …

Bottom-up coarse-graining: Principles and perspectives

J Jin, AJ Pak, AEP Durumeric, TD Loose… - Journal of chemical …, 2022 - ACS Publications
… In CG modeling, the transferability issue naturally emerges from the differences between
the FG and CG Hamiltonians and can be defined as a measure of how predictive or …

Data-driven coarse graining in action: Modeling and prediction of complex systems

S Krumscheid, M Pradas, GA Pavliotis, S Kalliadasis - Physical Review E, 2015 - APS
… To illustrate the estimation step of our data-driven coarsegraining framework, we perform a
numerical experiment based on a computer-generated time series. Specifically, we consider …

Coarse-graining auto-encoders for molecular dynamics

W Wang, R Gómez-Bombarelli - npj Computational Materials, 2019 - nature.com
… phase materials and, as a predictive tool, enable computational design of … Coarse-graining
methods allow larger systems to be … Coarse-graining involves two coupled learning problems: …

Coarse-graining methods for computational biology

MG Saunders, GA Voth - Annual review of biophysics, 2013 - annualreviews.org
… Without a connection to known physical law, it is very unlikely that coarse-graining can
become a predictive, quantitative methodology in any field of science. Fortunately, the theoretical …

Coarse-Graining and Data Mining Approaches to the prediction of structures and their dynamics

S Curtarolo - 2003 - dspace.mit.edu
… to this problem is the systematic coarse-graining of less relevant degrees of … spatial
coarse-graining. In the second part of the thesis, we analyze the problem of crystal structure …

CoarseGraining with the Relative Entropy

MS Shell - Advances in chemical physics, 2016 - Wiley Online Library
… Beyond predictive and practical reasons for coarse-graining, another growing motivation in
… theory associated with the coarse-graining process. Indeed, coarse-graining can be viewed …

Incorporating physical constraints in a deep probabilistic machine learning framework for coarse-graining dynamical systems

S Kaltenbach, PS Koutsourelakis - Journal of Computational Physics, 2020 - Elsevier
… As with any coarse-graining process, we recognize that this would unavoidably imply
some information loss which in turn will give rise to predictive uncertainty [48]. In this work, we …