[HTML][HTML] Primer design for quantitative real-time PCR for the emerging Coronavirus SARS-CoV-2

D Li, J Zhang, J Li - Theranostics, 2020 - ncbi.nlm.nih.gov
… Therefore, we suggest that in the primer design for SARS-CoV-2, it is more effective to
design the primer targeting position on the stem, at least to make sure that the 3 ' terminal bases …

Optimization of primer sets and detection protocols for SARS-CoV-2 of coronavirus disease 2019 (COVID-19) using PCR and real-time PCR

M Park, J Won, BY Choi, CJ Lee - Experimental & molecular medicine, 2020 - nature.com
… a Three-step guidelines for PCR primer design and … each primer set, we designed new
primer sets targeting the RdRP, S, and N genes in the SARS-CoV-2 genome, where each primer

Diagnosing the novel SARS-CoV-2 by quantitative RT-PCR: variations and opportunities

HG Barreto, FA de Pádua Milagres… - Journal of Molecular …, 2020 - Springer
SARS-CoV-2 genomes revealed that the new coronavirus … to facilitate real-time mutation
tracking of SARS-CoV-2. This … used for the design of SARS-CoV-2 primer and probe sets by …

A new SYBR Green real-time PCR to detect SARS-CoV-2

DR Marinowic, G Zanirati, FVF Rodrigues, MVC Grahl… - Scientific reports, 2021 - nature.com
… positive and/or negative cases of the new coronavirus. … of SARS-CoV-2-positive samples
using hCOVassay2 primer at … concentrations of quantification control for SARS-CoV-2 (iDT—…

Analytical comparisons of SARS-COV-2 detection by qRT-PCR and ddPCR with multiple primer/probe sets

X Liu, J Feng, Q Zhang, D Guo, L Zhang… - Emerging microbes & …, 2020 - Taylor & Francis
… acid detection of SARS-CoV-2 by quantitative real time … acute respiratory syndrome
coronavirus (SARS-CoV-2, also refers … , quantitative real time polymerase chain reaction (qRT-PCR) …

Design of SARS-CoV-2 variant-specific pcr assays considering regional and temporal characteristics

C Oh, P Sashittal, A Zhou, L Wang… - Applied and …, 2022 - Am Soc Microbiol
… public health decisions during the COVID-19 pandemic. … However, despite the availability
of vaccines, emerging new … for publication of quantitative real-time PCR experiments (MIQE) to …

Comparative performance of SARS-CoV-2 detection assays using seven different primer-probe sets and one assay kit

AK Nalla, AM Casto, MLW Huang… - Journal of clinical …, 2020 - Am Soc Microbiol
… respiratory syndrome coronavirus 2 (SARS-CoV-2) beginning in … RT-PCR was performed on
an ABI 7500 real-time PCR … World Reference Center for Emerging Viruses and Arboviruses (…

… an amplification refractory mutation system-quantitative reverse transcription-PCR assay for rapid and sensitive screening of SARS-CoV-2 variants of concern

D Xiong, X Zhang, M Shi, N Wang, P He… - Microbiology …, 2022 - Am Soc Microbiol
… acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has … provide a general way
to determine other emerging variants. … in a CFX96 Touch real-time PCR detection system (CFX96; …

Development of a qualitative real-time RT-PCR assay for the detection of SARS-CoV-2: a guide and case study in setting up an emergency-use, laboratory-developed …

BM Shaw, D Slater, EH Byrne… - Journal of Clinical …, 2021 - jcp.bmj.com
… of testing capacity persisting during the COVID-19 outbreak, our … shortages, and newly
evolving SARS-CoV-2 variants that could … primer hits in any organisms besides SARS-CoV-2, …

Direct PCR with the CDC 2019 SARS-CoV-2 assay: optimization for limited-resource settings

CM Victoriano, ME Pask, NA Malofsky, A Seegmiller… - Scientific Reports, 2022 - nature.com
… capabilities for COVID-19 or other emerging pathogens … in silico primer design tools only
serve as a guideline, and primer … step for the CDC SARS-CoV-2 primer sets, we have found that …