Quantum mechanical study of secondary structure formation in protected dipeptides

A Šarić, T Hrenar, M Mališ, N Došlić - Physical Chemistry Chemical …, 2010 - pubs.rsc.org
Physical Chemistry Chemical Physics, 2010pubs.rsc.org
An extensive computational study of the conformational preferences of three capped
dipeptides: Ac-Xxx-Phe-NH2, Xxx= Gly, Ala, Val is reported. On the basis of local second-
order Møller–Plesset perturbation theory (LMP2) and DFT computations we were able to
identify the experimentally observed conformers as γL–γL (g−) and β-turn I (g+) in Ac-Gly-
Phe-NH2, and Ac-Ala-Phe-NH2, and as the closely related γL (g+)–γL (g−) and β-turn I (a,
g+) in Ac-Val-Phe-NH2. In contrast to the experimental observation that peptides with bulky …
An extensive computational study of the conformational preferences of three capped dipeptides: Ac-Xxx-Phe-NH2, Xxx = Gly, Ala, Val is reported. On the basis of local second-order Møller–Plesset perturbation theory (LMP2) and DFT computations we were able to identify the experimentally observed conformers as γL–γL(g−) and β-turn I(g+) in Ac-Gly-Phe-NH2, and Ac-Ala-Phe-NH2, and as the closely related γL(g+)–γL(g−) and β-turn I(a,g+) in Ac-Val-Phe-NH2. In contrast to the experimental observation that peptides with bulky side chain have a propensity for β-turns, we show that in Ac-Val-Phe-NH2 the minimum energy structure corresponds to the experimentally non detected β-strand.
The Royal Society of Chemistry
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