Splinedist: Automated cell segmentation with spline curves

S Mandal, V Uhlmann - 2021 IEEE 18th International …, 2021 - ieeexplore.ieee.org
S Mandal, V Uhlmann
2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), 2021ieeexplore.ieee.org
We present SplineDist, an instance segmentation convolutional neural network for
bioimages extending the popular StarDist method. While StarDist describes objects as
starconvex polygons, SplineDist uses a more flexible and general representation by
modelling objects as planar parametric spline curves. Based on a new loss formulation that
exploits the properties of spline constructions, we can incorporate our new object model in
StarDist's architecture with minimal changes. We demonstrate in synthetic and real images …
We present SplineDist, an instance segmentation convolutional neural network for bioimages extending the popular StarDist method. While StarDist describes objects as starconvex polygons, SplineDist uses a more flexible and general representation by modelling objects as planar parametric spline curves. Based on a new loss formulation that exploits the properties of spline constructions, we can incorporate our new object model in StarDist's architecture with minimal changes. We demonstrate in synthetic and real images that SplineDist produces segmentation outlines of equal quality than StarDist with smaller network size and accurately captures non-star-convex objects that cannot be segmented with StarDist.
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