[PDF][PDF] Stochastic context-free grammars and RNA secondary structure prediction
M Knudsen - Master's thesis, 2005 - Citeseer
This thesis focus on the prediction of RNA secondary structure using stochastic context-free
grammars (SCFG). The RNA secondary structure prediction problem consists of predicting a
2-dimensional structure from a 1-dimensional nucleotide sequence. The theory behind
SCFG is explained and an overview of the research literature on various methods in the field
of secondary structure prediction is given. Furthermore, a SCFG framework is developed in
the JAVA programming language as part of the thesis. This framework is used to test the …
grammars (SCFG). The RNA secondary structure prediction problem consists of predicting a
2-dimensional structure from a 1-dimensional nucleotide sequence. The theory behind
SCFG is explained and an overview of the research literature on various methods in the field
of secondary structure prediction is given. Furthermore, a SCFG framework is developed in
the JAVA programming language as part of the thesis. This framework is used to test the …
[引用][C] Stochastic context-free grammars and RNA secondary structure prediction
J Anderson - Genome analysis: current …, 2014 - Caister Academic Press England
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