Structure of a synthetic fragment of the LALF protein when bound to lipopolysaccharide

P Pristovšek, K Fehér, L Szilágyi… - Journal of medicinal …, 2005 - ACS Publications
P Pristovšek, K Fehér, L Szilágyi, J Kidrič
Journal of medicinal chemistry, 2005ACS Publications
Peptidic lipopolysaccharide (LPS) antagonists are the subject of intensive research. We
report an NMR and modeling study of LALF-14 (GCKPTFRRLKWKYKCG), a synthetic
cyclized fragment of the limulus anti-LPS factor (LALF) comprising residues 36− 47. In a
mixture with LPS we observed the transferred NOE effect and derived the LPS-bound
structure of LALF-14. Neither the free nor the LPS-bound peptide displays NOEs indicative
of a β-sheet-like structure that is adopted by the fragment in the full-size protein. However …
Peptidic lipopolysaccharide (LPS) antagonists are the subject of intensive research. We report an NMR and modeling study of LALF-14 (GCKPTFRRLKWKYKCG), a synthetic cyclized fragment of the limulus anti-LPS factor (LALF) comprising residues 36−47. In a mixture with LPS we observed the transferred NOE effect and derived the LPS-bound structure of LALF-14. Neither the free nor the LPS-bound peptide displays NOEs indicative of a β-sheet-like structure that is adopted by the fragment in the full-size protein. However, docking calculations show that the former structure is not a prerequisite for binding of LALF-14 to LPS.
ACS Publications
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