Then synthesis of Ni (L) (1) and VO (L) (2) [H2L = N-2-hydroxyacetophenon-Ń-2, 4-dihydroxbenzaldehyde-1, 2-phenylenediimine)] novel unsymmetrical heterocyclic Schiff base complexes is reported. Elemental analysis, UV-Vis, IR spectroscopy, multi-nuclear spectroscopy (1H and 13C NMR) and single crystal X-ray diffraction analysis have been used to characterize the products. UV-Vis spectroscopy, emission titration, viscosity measurement, helix melting methods and circular dichroism (CD) spectroscopy have been applied to investigate the interactions of the complexes with CT-DNA. Intercalative binding mode between the complexes and DNA is suggested by the binding constant (Kb) values of 2.9 × 104 and 5.4 × 104 for complexes 1 and 2, respectively. In particular, the in vitro cytotoxicity of the complexes on two cancer cells lines (MDA-MB 231, SKOV-3 cell line) showed that the compounds had broad spectrum, anti-cancer activity with low IC50 values and the order of in vitro anticancer activities is consistent with the DNA-binding affinities. In addition, protein binding studies using fluorescence spectroscopy have shown that the new complexes strongly quench the intrinsic BSA fluorescence by a static mechanism based on the bovine serum albumin (BSA) binding activity studies.