The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data

E Cerami, J Gao, U Dogrusoz, BE Gross, SO Sumer… - Cancer discovery, 2012 - AACR
… In summary, the cBio portal facilitates access to cancer genomic data sets for the entire
biomedical community. It provides a simple yet flexible interface to integrated data sets, intuitive …

Integration and Analysis of CPTAC Proteomics Data in the Context of Cancer Genomics in the cBioPortal*[S]

P Wu, ZJ Heins, JT Muller, L Katsnelson… - Molecular & Cellular …, 2019 - ASBMB
… in the context of the clinical and genomics data from the same tumors. cBioPortal is an open
source platform for exploring, visualizing, and analyzing multidimensional cancer genomics

Visualizing multidimensional cancer genomics data

MP Schroeder, A Gonzalez-Perez, N Lopez-Bigas - Genome medicine, 2013 - Springer
… well suited to the exploration of multidimensional cancer genomics data. Its interactive …
cBio Cancer Genomics Portal [32], IntOGen [33] and Regulome Explorer [70]. Open source

Integration of online omics-data resources for cancer research

T Das, G Andrieux, M Ahmed, S Chakraborty - Frontiers in Genetics, 2020 - frontiersin.org
… -data resources such as The Cancer Genome Atlas (TCGA) … Examples of multidimensional
online data portals and … exploration opportunity of the somatic mutational landscape of the …

ClickGene: an open cloud-based platform for big pan-cancer data genome-wide association study, visualization and exploration

JH Bi, YF Tong, ZW Qiu, XF Yang, J Minna, AF Gazdar… - BioData Mining, 2019 - Springer
… of such comprehensive pan-cancer genome analysis greatly … Therefore, it fills in the gaps
between big cancer genomics … Therefore, we adopted BootStrap (an open source toolkit for …

Precision oncology platforms: practical strategies for genomic database utilization in cancer treatment

AA Gazola, W Lautert-Dutra, LF Archangelo… - Molecular …, 2024 - Springer
cancer genomic data into clinical practice. These platforms will also be invaluable for
translational cancer … data from numerous cancer studies, allowing researchers to explore and …

Oncogenomic portals for the visualization and analysis of genome-wide cancer data

K Klonowska, K Czubak, M Wojciechowska… - …, 2015 - pmc.ncbi.nlm.nih.gov
… to exploring the multidimensional character of genome-wide … feature of the Cancer Genetics
Web portal is a colorful panel … fourth portal is CaSNP, which gathers the results of genome-…

TCGA2BED: extracting, extending, integrating, and querying The Cancer Genome Atlas

F Cumbo, G Fiscon, S Ceri, M Masseroli… - BMC bioinformatics, 2017 - Springer
genomic abnormalities in several cancer types including data from TCGA. The cBio Cancer
Genomics Portal [17] is an open… and download of multidimensional cancer genomic data sets …

caOmicsV: an R package for visualizing multidimensional cancer genomic data

H Zhang, PS Meltzer, SR Davis - BMC bioinformatics, 2016 - Springer
… [8–10] help in exploring relationships between genomic alterations or … open source tool
used in cancer research community for statistical analysis and visualization of cancer genomic

The Cancer Genome Atlas Clinical Explorer: a web and mobile interface for identifying clinical–genomic driver associations

HJ Lee, J Palm, SM Grimes, HP Ji - Genome medicine, 2015 - Springer
… To enable exploration of the clinical–genomic driver … genomic alteration data from different
genomic platforms as well as clinical meta-data from TCGA. For example, for colorectal cancer