… case of the mixed model with phylogenetic … of the generalized least squares method in which
the constraining force (α) tends to 0. The additional parameters are what give PGLS and the …

… to co-occur at the same site. Here, we present phylogenetic generalized linear mixed models
(PGLMMs) that can statistically test a wide variety of phylogenetic patterns in community …

… phylogenetic signal than simple models. Our results indicate that complex models do extract
more phylogenetic signal from the … We also address how differences in phylogenetic results (…

… In addition, I will compare the properties of the |$R^{2}$|s applied to phylogenetic data to
the properties of the |$R^{2}$|s applied to mixed models. This comparison shows …

… However, the focus of the current study is on the strictly … The new version VI of RAxML has
been presented, which … implementations, and a mixed model implementation. A thorough …

… in the context of phylogenetic mixed models, part of the G-structure (the phylogenetic effects
at the tips) can be moved into the … directly from the concept of the reduced animal model from …

… more parameters in the mixed model, we will be … the chain longer before an adequate sample
of the posterior distribution is obtained. The net effect is dependent on the particulars of the …

… understanding of the behavior of the ILD test is warranted. Here, we investigate the behavior
of the ILD test in mixed-model MP analyses. We find that models change the contribution of …

… based on a generalized mixed model framework, for capturing … the potential phylogenetic
relatedness among species, the … the linear mixed model (LMM) to build the prediction model …

… Since this is not a typical GLMM, I’ll leave explaining exactly what a mixed model (LMM or
GLMM) is until returning to them … The simulation model looks exactly like the model we fit to …