The two-faced T cell epitope: examining the host-microbe interface with JanusMatrix

L Moise, AH Gutierrez, C Bailey-Kellogg… - Human vaccines & …, 2013 - Taylor & Francis
… to other putative T cell epitopes. JanusMatrix defines cross-reactive T cell epitopes as those
that … We expect that the exploration of the two-faced T cell epitope using JanusMatrix will …

Smarter vaccine design will circumvent regulatory T cell-mediated evasion in chronic HIV and HCV infection

L Moise, F Terry, AH Gutierrez, R Tassone… - Frontiers in …, 2014 - frontiersin.org
… We have examined TCR-facing residues for conservation against a … JanusMatrix, we
discovered a promiscuous class II epitope … Finally, we are exploring means to fine-tune the epitope

H7N9 T-cell epitopes that mimic human sequences are less immunogenic and may induce Treg-mediated tolerance

R Liu, L Moise, R Tassone, AH Gutierrez… - Human vaccines & …, 2015 - Taylor & Francis
JanusMatrix Delta values for the peptides used in this study ranged from 0 to 37.89. A … The
two-faced T cell epitope: examining the host-microbe interface with JanusMatrix. Hum Vaccin …

Better epitope discovery, precision immune engineering, and accelerated vaccine design using immunoinformatics tools

AS De Groot, L Moise, F Terry, AH Gutierrez… - Frontiers in …, 2020 - frontiersin.org
examine T cell epitopes and their role in vaccines, using the power of immunoinformatics. …
Measure) as well as an adaptation of JanusMatrix to iTEM (J-iTEM), we found T cell responses …

Immune camouflage: relevance to vaccines and human immunology

AS De Groot, L Moise, R Liu, AH Gutierrez… - Human vaccines & …, 2014 - Taylor & Francis
… To define cross-conserved T cell epitopes, we use JanusMatrix, which operates in conjunction
with an existing T cell epitope-… The two-faced T cell epitope: examining the host-microbe

Identification, Selection and Immune Assessment of Liver Stage CD8 T Cell Epitopes From Plasmodium falciparum

KD Tucker, BC Schanen, TW Phares… - Frontiers in …, 2021 - frontiersin.org
JanusMatrix score for each protein was determined using the average JanusMatrix score for
all the putative class II epitopes … In the current study we decided to verify immunogenicity of …

T cell epitope redundancy: cross-conservation of the TCR face between pathogens and self and its implications for vaccines and autoimmunity

L Moise, S Beseme, R Tassone, R Liu… - Expert Review of …, 2016 - Taylor & Francis
… Using JanusMatrix, we identified human-like T-cell epitopes in the genomes of viruses
and bacteria. Analyzing pathogens that co-evolved with humans (eg EBV, CMV, HIV), we …

Does human homology reduce the potential immunogenicity of non-antibody scaffolds?

AS De Groot, S Khan, AE Mattei, S Lelias… - Frontiers in …, 2023 - frontiersin.org
epitope databases, Moise et al. identified a JanusMatrix score threshold of three, as defining
potentially tolerated epitope (46), while T cell epitopes with JanusMatrix … for this study are …

In silico identification and modification of T cell epitopes in pertussis antigens associated with tolerance

C Kruiswijk, G Richard, MLM Salverda… - Human Vaccines & …, 2020 - Taylor & Francis
JanusMatrix algorithm to identify epitopes that may be unlikely to stimulate effector T cell
responses due to similarity (at the T cellT cell epitope clusters in the seven proteins under study

Immune Camouflage: Relevance to Vaccine Design and Human Immunology

AS De Groot, L Moise, R Liu, AH Gutierrez, R Tassone… - 2014 - digitalcommons.uri.edu
… To define cross-conserved T cell epitopes, we use JanusMatrixT cell epitope-mapping
platform (EpiMatrix)31 JanusMatrix … The two-faced T cell epitope: Examining the host-microbe