Thresher sharks (family Alopiidae) are an evolutionarily distinct and globally endangered species group. Indonesia is the world's largest shark fishing nation, and a global priority for reducing the capture of threatened shark species. Kutaradja port is one of Indonesia's largest fishing ports, located in the capital of Aceh Province, Banda Aceh, Western Indonesia. Kutaradja is a large oceanic port serving a variety of fisheries, from small scale to industrial fleets. One of the main fisheries operating from Kutaradja port is an industrial purse seine fleet targeting valuable pelagic fish, particularly tuna. Pelagic sharks such as threshers are vulnerable to capture in these fisheries, due to their co-occurrence with stocks of valuable pelagic species. Here we describe the volume and composition of shark catch in Kutaradja's purse seine fleet, based on daily landing monitoring conducted in January 2017 to May 2019. Our results show that the dominant species caught are thresher sharks (Alopiidae), which make up 51% of all shark landings. A total of 627 thresher sharks were landed during the monitoring period, consisting of 558 individuals of pelagic threshers shark (Alopias pelagicus) and 69 individuals of bigeye thresher shark (Alopias superciliosus). The catch is dominated by mature females, which could be particularly detrimental to the reproductive capacity of the population. Fishers in purse seine vessels often catch these threshers with hand-lines, which are used as a secondary gear while the main fishing gear is soaking. Based on these findings, we proposed recommendations for reducing thresher shark fishing mortality, including restricting the use of secondary fishing gears and releasing incidentally captured sharks.