Water activity (a_w) is a major factor affecting pathogen heat resistance in low-moisture foods. However, there is a lack of data for a_w at elevated temperatures that occur during actual thermal processing conditions, and its influence on thermal tolerance of pathogens. The objective of this study was to gain an in-depth understanding of the relationship between temperature-induced changes in a_w and thermal resistance of Salmonella in all purpose flour and peanut butter at elevated temperatures (80 ^oC). Equilibrium water sorption isotherms (water content vs. water activity) for all purpose wheat flour and peanut butter over the range of 20 to 80 °C were generated using a vapor sorption analyzer and a newly developed thermal cell. The thermal resistance (D₈₀-values) of Salmonella in all purpose wheat flour and peanut butter with initial a_w of 0.45 (measured at room temperature, ~ 20 °C) was determined via isothermal treatment of small (< 1 g) samples. When increasing sample temperature from 20 to 80 °C in sealed cells, the a_w of all purpose flour increased from 0.45 to 0.80, but the a_w of peanut butter decreased from 0.45 to 0.04. The corresponding estimated D₈₀-values of Salmonella in all purpose flour and peanut butter with 20 ^oC a_w of 0.45 were 6.9 ± 0.7 min and 17.0 ± 0.9 min, respectively. The significantly (P < 0.05) higher D₈₀-value of Salmonella in peanut butter than in all purpose flour may be partially attributed to the reduced a_w in peanut butter in comparison to the increased a_w in all purpose flour at 80 °C. The improved understanding of temperature-induced changes in a_w of low-moisture products of different composition provides a new insight into seemly unpredictable results, when using heat treatments to control Salmonella in such food systems.