Zsyntax: a formal language for molecular biology with projected applications in text mining and biological prediction

G Boniolo, M D'Agostino, PP Di Fiore - PloS one, 2010 - journals.plos.org
We propose a formal language that allows for transposing biological information precisely
and rigorously into machine-readable information. This language, which we call Zsyntax
(where Z stands for the Greek word ζωή, life), is grounded on a particular type of non-
classical logic, and it can be used to write algorithms and computer programs. We present it
as a first step towards a comprehensive formal language for molecular biology in which any
biological process can be written and analyzed as a sort of logical “deduction”. Moreover …

[PDF][PDF] Zsyntax: A Formal Language for Molecular Biology with Projected Applications in Text Mining and Biological

G Boniolo, M D'Agostino, PP Di Fiore - 2010 - academia.edu
We propose a formal language that allows for transposing biological information precisely
and rigorously into machinereadable information. This language, which we call Zsyntax
(where Z stands for the Greek word fvg, life), is grounded on a particular type of non-
classical logic, and it can be used to write algorithms and computer programs. We present it
as a first step towards a comprehensive formal language for molecular biology in which any
biological process can be written and analyzed as a sort of logical ''deduction''. Moreover …
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