… However, we still lack both a comprehensive compendium of features that influence TF
binding and an understanding of how these pieces fit together. Furthermore, we are just …

… by transcription factors (TFs) that recruit the transcriptional … TFs recognize similar consensus
DNA-binding sites and a genome can … Although nonfunctional binding may influence gene …

… How do TFs recognize specific binding sites among the … binding of TFs to coregulators,
that prior binding events can lead to selective DNA binding, and that selectivity is influenced by …

… with respect to phylogenetic footprinting of transcription factor (TF) binding sites in the γ-…
coli genes that have experimentally identified TF binding sites upstream of the gene, with …

… A crucial question in the field of gene regulation is whether the location at which a
transcription factor binds influences its effectiveness or the mechanism by which it regulates …

… binding of both transcription factors. The modification type, 5mC or 5hmC, was not
observed to influence binding affinity to USF or MAX within our limits of detection. USF binding …

… over which transcription factor (TF) binding influences gene … ranges of regulatory influence,
chromatin-binding preferences, and … Our results suggest that considering TF type, binding …

… of the associated binding sites. We further demonstrated that nucleosomal context of binding
sites is … We conclude that nucleosomal context of binding sites influences TF binding affinity, …

Statistical models have been used to quantify the relationship between gene expression and
transcription factor (TF) binding signals. Here we apply the models to the large-scale data …

… These observations demonstrate the need for a more comprehensive understanding of
the various factors influencing TF binding to regulatory sequences, going beyond the …