[HTML][HTML] Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data

D Dimitrov, D Türei, M Garrido-Rodriguez… - … communications, 2022 - nature.com
… to predict potential cell-cell communication events. Yet the … compare 16 cell-cell communication
inference resources and … Finally, we assess the agreement of cell-cell communication

[HTML][HTML] A review of single-cell RNA-Seq annotation, integration, and cellcell communication

C Cheng, W Chen, H Jin, X Chen - Cells, 2023 - mdpi.com
… One of the key challenges in developing algorithms for analyzing cellcell communication
using single-cell RNA sequencing (scRNA-seq) data is the lack of reliable ground truth for the …

[HTML][HTML] Analysis of single-cell RNA-seq identifies cell-cell communication associated with tumor characteristics

MP Kumar, J Du, G Lagoudas, Y Jiao, A Sawyer… - Cell reports, 2018 - cell.com
… composed of multiple cell types that communicate by ligand-… communication by ligand-receptor
interactions across all cell types in a microenvironment using single-cell RNA sequencing

Identify, quantify and characterize cellular communication from single-cell RNA sequencing data with scSeqComm

G Baruzzo, G Cesaro, B Di Camillo - Bioinformatics, 2022 - academic.oup.com
cell RNA sequencing (scRNA-seq) technologies provides a way to study cellcell communication
using RNA … scRNA-seq data can be used to infer intercellular communication through …

scConnect: a method for exploratory analysis of cellcell communication based on single-cell RNA-sequencing data

JET Jakobsson, O Spjuth, MC Lagerström - Bioinformatics, 2021 - academic.oup.com
Cell to cell communication is critical for all multicellular organisms, and single-cell
sequencingCell to cell communication is critical for all multicellular organisms. Most inter-tissue …

[HTML][HTML] Inference and analysis of cell-cell communication using CellChat

S Jin, CF Guerrero-Juarez, L Zhang, I Chang… - … communications, 2021 - nature.com
… spatially adjacent cell types should have stronger cellcell communication than spatially
distant cells. We have studied cellcell communication for four spatially colocalized cell

[HTML][HTML] The landscape of cellcell communication through single-cell transcriptomics

AA Almet, Z Cang, S Jin, Q Nie - Current opinion in systems biology, 2021 - Elsevier
… more comprehensive description of cellcell communication. This … to infer cellcell
communication from non-spatial single-cell and … is single-cell RNA sequencing (scRNA-seq), …

[HTML][HTML] Deciphering cellcell interactions and communication from gene expression

E Armingol, A Officer, O Harismendy… - Nature Reviews …, 2021 - nature.com
… Paracrine cellcell communication does not require cellcell contact, rather depending on
… direct measurement of protein abundances, RNA sequencing (RNA-seq) data sets are more …

CellCommuNet: an atlas of cellcell communication networks from single-cell RNA sequencing of human and mouse tissues in normal and disease states

Q Ma, Q Li, X Zheng, J Pan - Nucleic Acids Research, 2024 - academic.oup.com
… data resource that explores cellcell communication networks in human and mouse
tissues under normal and disease conditions using scRNA-seq. Given the advantages of the …

[HTML][HTML] Cellcell communication: old mystery and new opportunity

D Song, D Yang, CA Powell, X Wang - Cell biology and toxicology, 2019 - Springer
Cellcell communication is a critical process that maintains the biological functions and
microenvironmental hemostasis of cells, organs… Single-cell RNA sequencing provides single-cell