Measurement of protein-DNA interactions in vivo by chromatin immunoprecipitation

H Im, JA Grass, KD Johnson, ME Boyer, J Wu… - Signal Transduction …, 2004 - Springer
… are crucial determinants of chromatin accessibility. These … chromatin immunoprecipitation
(ChIP) assay. ChIP analysis involves covalently trapping endogenous proteins at chromatin

An algorithm for finding proteinDNA binding sites with applications to chromatin-immunoprecipitation microarray experiments

XS Liu, DL Brutlag, JS Liu - Nature biotechnology, 2002 - nature.com
Chromatin immunoprecipitation followed by cDNA microarray hybridization (… proteinDNA
interactions and transcription regulation. However, it can only map the probable proteinDNA

Chromatin immunoprecipitation (chip)

MF Carey, CL Peterson… - Cold Spring Harbor …, 2009 - cshprotocols.cshlp.org
Chromatin immunoprecipitation is the most common method for examining the association
… an endogenous DNA region of interest, as well as for studying protein-DNA interactions at a …

Chromatin immunoprecipitation assay

PM Das, K Ramachandran, J vanWert, R Singal - Biotechniques, 2004 - Future Science
… It is important to know the genomic targets of DNA-binding proteins and the mechanisms
by … Chromatin immunoprecipitation (ChIP) is an important technique in the study of protein-…

High-throughput chromatin immunoprecipitation for genome-wide mapping of in vivo protein-DNA interactions and epigenomic states

R Blecher-Gonen, Z Barnett-Itzhaki, D Jaitin… - Nature protocols, 2013 - nature.com
… Although methods for mapping in vivo protein-DNA interactions are becoming crucial for …
in vivo protein-DNA interactions using a high-throughput chromatin immunoprecipitation (HT-…

The current state of chromatin immunoprecipitation

P Collas - Molecular biotechnology, 2010 - Springer
… of interactions of nuclear proteins with DNA in the context of … of chromatin immunoprecipitation
(ChIP). ChIP is a technique whereby a protein of interest is selectively immunoprecipitated

Characterization of protein-DNA association in vivo by chromatin immunoprecipitation

L Kuras - Signal Transduction Protocols, 2004 - Springer
Chromatin immunoprecipitation (ChIP) is a highly powerful method to identify and characterize
protein-DNA interactions in vivo within a natural chromatin … ” protein-DNA interactions …

Chromatin immunoprecipitation and microarray-based analysis of protein location

TI Lee, SE Johnstone, RA Young - Nature protocols, 2006 - nature.com
… ChIP-Chip, combines chromatin immunoprecipitation and DNA microarray analysis to identify
protein-DNA interactions that occur in living cells. Protein-DNA interactions are captured in …

Protocol for the fast chromatin immunoprecipitation (ChIP) method

JD Nelson, O Denisenko, K Bomsztyk - Nature protocols, 2006 - nature.com
… This allowed us to probe 12 different factors from one chromatin preparation (Fig. 3). Each
chromatin IP yields sufficient amounts of DNA for 80 10-μl real-time PCRs, which allowed us …

In vivo cross-linking and immunoprecipitation for studying dynamic Protein: DNA associations in a chromatin environment

MH Kuo, CD Allis - Methods, 1999 - Elsevier
chromatin immunoprecipitation assay have been focused on characterizing the DNA sequences
associated with the DNA-binding protein of … the chromatin immunoprecipitation assay to …