… Here we provide a comprehensive overview and the first cell type-specific quantitative
comparison of existing methods applied to RNA-seq data to guide researchers and clinicians in …

… next consider our original experiment in which FACS cell counts were available 2 . They …
They evaluated ReFACTor by measuring the correlation between each cell type and ReFACTor …

… Yet to preserve the integrity of the raw datasets, we excluded neither cell types of small
populations nor atypical cell types, leaving further processing jobs to the experimental dataset …

… to derive a full comprehensive evaluation of the immune environment … that stromal evaluation
of several immune cell types is … Third, our results raise caution for the evaluation of immune …

… in the external scRNA-seq reference are different from those in the ST data, we combined
neuronal cell types and kept only the overlapping cell types when evaluating the performance. …

… In this study, we performed a comprehensive evaluation of 28 denoising procedures on 55
scenarios using both simulated and real datasets. These scenarios account for a variety of …

… relative TME cell estimation of 18 cell types. We collected a comprehensive benchmark dataset
… counts) and cell-specific benchmark datasets (peripheral blood cells and tumor tissues). …

… Here, we perform a comprehensive evaluation of brain transcriptome deconvolution … cell-type
signature datasets that differ in biological properties (cultured cells, immuno-purified cells, …

… In this study we use known regulatory networks to do a comprehensive and robust evaluation
of … Using our evaluation workflow, we also investigate several practical aspects of module …

… While these approaches can be highly effective, they can also struggle in cases where
only a subset of cell types are shared across datasets or significant technical variation masks …