[HTML][HTML] Explainable detection of adverse drug reaction with imbalanced data distribution

J Wang, LC Yu, X Zhang - PLoS computational biology, 2022 - journals.plos.org
… By assigning more weights to the minority class, the model can be forced to pay more
attention to such classes, for effective detection. Furthermore, we introduce an explainable

Explainable artificial intelligence for pharmacovigilance: What features are important when predicting adverse outcomes?

IR Ward, L Wang, J Lu, M Bennamoun… - Computer Methods and …, 2021 - Elsevier
drugs were investigated for this study, as they capture the drugs of interest (rofecoxib and
celecoxib) and drugs … We disregard uncommon drugs with less than 10,000 total dispensing …

[HTML][HTML] Knowledge graphs and explainable ai in healthcare

E Rajabi, S Kafaie - Information, 2022 - mdpi.com
… Knowledge graphs can be used in XAI for explainability by structuring information, … for
explainability to detect healthcare misinformation, adverse drug reactions, drug-drug interactions …

[HTML][HTML] Development and validation of an explainable machine learning-based prediction model for drug–food interactions from chemical structures

QH Kha, VH Le, TNK Hung, NTK Nguyen, NQK Le - Sensors, 2023 - mdpi.com
… patients’ health and drug labeling [6]. Four hundred sixty-two medicinal products were
withdrawn from the market due to adverse drug reactions in DFIs and drug-drug interactions (DDIs…

Deep learning identifies explainable reasoning paths of mechanism of action for drug repurposing from multilayer biological network

J Yang, Z Li, WKK Wu, S Yu, Z Xu, Q Chu… - Briefings in …, 2022 - academic.oup.com
… We believe iDPath can bring revelation to the explainable deep learning technologies to
drug discovery. As a deep learning approach, iDPath is limited to in silico study, which can be …

Investigating ADR mechanisms with knowledge graph mining and explainable AI

E Bresso, P Monnin, C Bousquet, FE Calvier… - arXiv preprint arXiv …, 2020 - arxiv.org
… Conditional Random Fields to allow the calculation of the probability of drug reactions
given a input drug and a knowledge graph of drugs, proteins, pathways and phenotypes [17]. …

[HTML][HTML] Drug discovery with explainable artificial intelligence

J Jiménez-Luna, F Grisoni, G Schneider - Nature Machine Intelligence, 2020 - nature.com
… There is a demand for ‘explainable’ deep learning methods to … algorithmic concepts of
explainable artificial intelligence, and … acceptance of explainable artificial intelligence techniques. …

[HTML][HTML] Investigating ADR mechanisms with explainable AI: a feasibility study with knowledge graph mining

E Bresso, P Monnin, C Bousquet, FÉ Calvier… - BMC medical informatics …, 2021 - Springer
… PhLeGrA is an analytic method implementing Hidden Conditional Random Fields to allow
the calculation of the probability of drug reactions given a input drug and a knowledge graph …

[HTML][HTML] Adverse drug reaction discovery using a tumor-biomarker knowledge graph

M Wang, X Ma, J Si, H Tang, H Wang, T Li… - Frontiers in …, 2021 - frontiersin.org
… In conclusion, the tumor-biomarker knowledge-graph based approach is an explainable
method for potential ADRs discovery based on biomarkers and might be valuable to the …

Interpretation of structure–activity relationships in real-world drug design data sets using explainable artificial intelligence

T Harren, H Matter, G Hessler, M Rarey… - Journal of Chemical …, 2022 - ACS Publications
In silico models based on Deep Neural Networks (DNNs) are promising for predicting
activities and properties of new molecules. Unfortunately, their inherent black-box character …