Cerebrospinal fluid proteomics and biological heterogeneity in Alzheimer's disease: a literature review

KEJ Wesenhagen, CE Teunissen… - Critical reviews in …, 2020 - Taylor & Francis
… for CSF proteomics studies that investigated AD, including the proteomic alterations and …
We also reviewed to what extent proteomic alterations may already occur in mild cognitive …

Proteomics of cerebrospinal fluid: throughput and robustness using a scalable automated analysis pipeline for biomarker discovery

A Núñez Galindo, M Kussmann, L Dayon - Analytical chemistry, 2015 - ACS Publications
proteomic discovery workflow, our methodology could miss information present at the protein
level that might be relevant as biomarker … and Scaffold proteomic tools, and integrated data …

[HTML][HTML] Proteomic profiling of paired interstitial fluids reveals dysregulated pathways and salivary NID1 as a biomarker of oral cavity squamous cell carcinoma*[S]

CW Hsu, KP Chang, Y Huang, HP Liu… - … & Cellular Proteomics, 2019 - ASBMB
… OSCC using body fluid-accessible biomarkers may improve the … As tumor interstitial fluid is
a proximal fluid enriched with … further integrated by Scaffold software (Version 4.2.1, Proteome

Large-scale integration of the plasma proteome with genetics and disease

E Ferkingstad, P Sulem, BA Atlason… - Nature …, 2021 - nature.com
… We integrated pQTL and genetic associations with diseases and other traits and found that …
influence levels of possible biomarkers. Combining proteomics, genomics and transcriptomics…

Reproducible quantification of cancer-associated proteins in body fluids using targeted proteomics

R Hüttenhain, M Soste, N Selevsek, H Röst… - Science translational …, 2012 - science.org
… -throughput proteomic and genomic screens (11). Additionally, computational approaches
are emerging that use data integration and network inference to generate sets of biomarker

Towards developing biomarkers for glioblastoma multiforme: a proteomics view

S Jayaram, MK Gupta, RV Polisetty… - … review of proteomics, 2014 - Taylor & Francis
… focus on plausible pipelines for multi-omic data integration to identify additional, high-confidence …
List of candidate plasma/serum/cerebrospinal fluid biomarkers reported in glioblastoma …

[HTML][HTML] Integrated proteomic profiling of cell line conditioned media and pancreatic juice for the identification of pancreatic cancer biomarkers

S Makawita, C Smith, I Batruch, Y Zheng… - … & cellular proteomics, 2011 - ASBMB
… Three strategies were employed for identification of candidate biomarkers: (1) examination
… ) integrative analysis, focusing on the overlap of proteins among the multiple biological fluids, …

Identification of tear fluid biomarkers in dry eye syndrome using iTRAQ quantitative proteomics

L Zhou, RW Beuerman, CM Chan… - Journal of proteome …, 2009 - ACS Publications
… -MS/MS quantitative proteomics is a powerful tool for biomarker discovery. … Proteomic
analysis of tear fluids of individuals is still in its infancy as the typical sample volume of tear fluid is …

[HTML][HTML] Proteomic characterization of the interstitial fluid perfusing the breast tumor microenvironment: a novel resource for biomarker and therapeutic target discovery

JE Celis, P Gromov, T Cabezon, JMA Moreira… - … & Cellular Proteomics, 2004 - ASBMB
proteome, our results open the possibility for the systematic search of diagnostic biomarkers
Integrating proteomic and functional genomic technologies in discovery-driven translational …

[HTML][HTML] Integration of proteomics, bioinformatics, and systems biology in traumatic brain injury biomarker discovery

JD Guingab-Cagmat, EB Cagmat, RL Hayes… - Frontiers in …, 2013 - frontiersin.org
… In this paper, advances and limitations of proteomics, bioinformatics, … to integrate the three
fields in relation to biomarker discovery, and limiting the discussion only to protein biomarkers