The chromatin landscape of healthy and injured cell types in the human kidney

DL Gisch, M Brennan, BB Lake, J Basta… - Nature …, 2024 - nature.com
… nucleus RNA expression and chromatin accessibility, DNA … the chromatin landscape and
gene regulation of the kidney in … kidney’s active, silent, and regulatory accessible chromatin

Single cell regulatory landscape of the mouse kidney highlights cellular differentiation programs and disease targets

Z Miao, MS Balzer, Z Ma, H Liu, J Wu… - Nature …, 2021 - nature.com
… To study the open chromatin heterogeneity across cell types … cell type-specific accessible
chromatin landscape by conducting … human kidney cell type-specific open chromatin landscape

Variation in chromatin accessibility in human kidney cancer links H3K36 methyltransferase loss with widespread RNA processing defects

JM Simon, KE Hacker, D Singh, AR Brannon… - Genome …, 2014 - genome.cshlp.org
… for use on primary human clinical samples to define the chromatin landscape in a … -kidney-specific
classes of chromatin accessibility changes, as well as those associated with chromatin

Single cell transcriptional and chromatin accessibility profiling redefine cellular heterogeneity in the adult human kidney

Y Muto, PC Wilson, N Ledru, H Wu, H Dimke… - Nature …, 2021 - nature.com
… in the adult mouse kidney has provided a framework for understanding how chromatin
accessibility … , the single-cell epigenomic landscape of the human kidney has not been described. …

Chromatin accessibility analysis and architectural profiling of human kidneys reveal key cell types and a regulator of diabetic kidney disease

M Eun, D Kim, SI Shin, HO Yang, KD Kim, SY Choi… - Kidney International, 2024 - Elsevier
… analysis of adult human kidneys by examining cell type-specific chromatin accessibility by
… and DKD human adult kidneys To analyze the chromatin landscape of kidney cell types, we …

Chromatin architecture reveals cell type-specific target genes for kidney disease risk variants

A Duan, H Wang, Y Zhu, Q Wang, J Zhang, Q Hou… - BMC biology, 2021 - Springer
… Our results provide a valuable multi-omics resource on the chromatin landscape of human
kidney tubule cells and establish a bioinformatic pipeline in dissecting functions of kidney

Defining the dynamic chromatin landscape of mouse nephron progenitors

S Hilliard, R Song, H Liu, C Chen, Y Li… - Biology …, 2019 - journals.biologists.com
… In general, our findings are consistent with those of recent scRNA-seq studies of human
kidney development (Lindstrom et al., 2018; Menon et al., 2018; Wang et al., 2018) …

Single-cell chromatin accessibility landscape in kidney identifies additional cell-of-origin in heterogenous papillary renal cell carcinoma

Q Wang, Y Zhang, B Zhang, Y Fu, X Zhao… - Nature …, 2022 - nature.com
chromatin sequencing (scATAC-seq) to capture the cell type-specific chromatin accessibility
landscape of normal human kidney … profiles of human pRCC samples against the landscape

SETD2 loss perturbs the kidney cancer epigenetic landscape to promote metastasis and engenders actionable dependencies on histone chaperone complexes

Y Xie, M Sahin, S Sinha, Y Wang, AM Nargund, Y Lyu… - Nature cancer, 2022 - nature.com
… may increase chromatin accessibility to transcription factors and chromatin modifiers, which
… Given that SETD2 is mutated in a wide variety of human cancers, our findings are poised to …

The roles of chromatin-remodelers and epigenetic modifiers in kidney cancer

L Liao, JR Testa, H Yang - Cancer genetics, 2015 - Elsevier
… Interestingly, even though the chromatin landscape is vast, these proteins were all targeted
toward a crowded area of histone H2 and H3 tails. Some of these sites were only a few …