Integrated proteomics and network analysis identifies protein hubs and network alterations in Alzheimer's disease

Q Zhang, C Ma, M Gearing, PG Wang, LS Chin… - Acta neuropathologica …, 2018 - Springer
… Here, we report a systems-level study of disease-associated proteome changes in human
… an integrated approach that combines mass spectrometry-based quantitative proteomics, …

Integrated proteomics reveals brain-based cerebrospinal fluid biomarkers in asymptomatic and symptomatic Alzheimer's disease

L Higginbotham, L Ping, EB Dammer, DM Duong… - Science …, 2020 - science.org
… Here, we used integrative proteomics to identify cerebrospinal fluid (CSF) biomarkers …
proteome resolved 44 biologically diverse modules, 15 of which overlapped with the CSF proteome

An Integrated Workflow for Multiplex CSF Proteomics and Peptidomics Identification of Candidate Cerebrospinal Fluid Biomarkers of Alzheimer's Disease

M Holtta, L Minthon, O Hansson… - Journal of proteome …, 2015 - ACS Publications
Many disease processes in the brain are reflected in the protein composition of the cerebrospinal
fluid (CSF). In addition to proteins, CSF also contains a large number of endogenous …

Integrated proteomics to understand the role of neuritin (NRN1) as a mediator of cognitive resilience to Alzheimer's disease

C Hurst, DA Pugh, MH Abreha, DM Duong… - … & Cellular Proteomics, 2023 - ASBMB
… ) of cultured neurons and integrated the results with the AD brain … the utility of integrating the
proteome from the human brain … Alzheimer's disease brain reveals strong proteomic disease-…

Integrated lipidomics and proteomics network analysis highlights lipid and immunity pathways associated with Alzheimer's disease

J Xu, G Bankov, M Kim, A Wretlind, J Lord… - Translational …, 2020 - Springer
… Our study highlights that the interpretation of multi-omics data such as lipidomics, proteomics
and genomics can be boosted by deploying systems biology approaches. Our integrative

Integrating the Alzheimer's disease proteome and transcriptome: a comprehensive network model of a complex disease

P Hallock, MA Thomas - Omics: a journal of integrative biology, 2012 - liebertpub.com
… complex diseases like Alzheimer's disease. We constructed a “Core” Alzheimer's disease
protein interaction network yet constructed for Alzheimer's disease. An “Expanded” network …

[HTML][HTML] Deep multilayer brain proteomics identifies molecular networks in Alzheimer's disease progression

B Bai, X Wang, Y Li, PC Chen, K Yu, KK Dey… - Neuron, 2020 - cell.com
Alzheimer's disease (AD) displays a long asymptomatic stage before dementia. We
characterize AD stage-associated molecular networks by profiling 14,513 proteins and 34,173 …

Integrated analysis of ultra-deep proteomes in cortex, cerebrospinal fluid and serum reveals a mitochondrial signature in Alzheimer's disease

H Wang, KK Dey, PC Chen, Y Li, M Niu, JH Cho… - Molecular …, 2020 - Springer
… In brief, a total of 10 individual datasets from three independent deep proteomic studies
were integrated for this analysis. The ranks of proteins were normalized by the total number of …

Lipidomics and proteomics: An integrative approach for early diagnosis of dementia and Alzheimer's disease

V Tiwari, S Shukla - Frontiers in Genetics, 2023 - frontiersin.org
disease may boost sensitivity and help prevent mistakes when comparing CSF fluid and plasma
for disease biomarker discovery by proteomics and … of the proteome results from multiple …

Integrated Genomic, Transcriptomic and Proteomic Analysis for Identifying Markers of Alzheimer's Disease

…, Alzheimer's Disease Neuroimaging Initiative (ADNI) - Diagnostics, 2021 - mdpi.com
There is an urgent need to identify biomarkers for Alzheimer’s disease (AD), but the identification
of reliable blood-based biomarkers has proven to be much more difficult than initially …