microRNA target predictions in animals

N Rajewsky - Nature genetics, 2006 - nature.com
… Current miRNA target predictions A new generation of miRNA target predictions emerged
in 2005, mainly based on systematic target-site mutation experiments 15 and more extensive …

MicroRNA target prediction tools for animals: Where we are at and where we are going to-A systematic review

RMMW Feitosa, P Prieto-Oliveira, H Brentani… - … Biology and Chemistry, 2022 - Elsevier
miRNA target prediction in animals, bringing the currently publicly available miRNA-mRNA
prediction … and unique tools created for miRNA target prediction, not including databases or …

Computational methods for microRNA target prediction

Y Watanabe, M Tomita, A Kanai - Methods in enzymology, 2007 - Elsevier
… It has been challenging to predict target genes for miRNAs in animals because of the … In
this section, we describe 11 software tools useful for miRNA target prediction and prediction

Prediction of both conserved and nonconserved microRNA targets in animals

X Wang, IM El Naqa - Bioinformatics, 2008 - academic.oup.com
Animal miRNAs have limited sequence complementarity to their gene targets, … target
prediction models with high specificity. Results: Here we present a new miRNA target prediction

Animal microRNA target prediction using diverse sequence-specific determinants

Y Zheng, W Zhang - Journal of Bioinformatics and Computational …, 2010 - World Scientific
… for improving miRNA target prediction. We develop a new miRNA target prediction algorithm,
… We evaluate the performance of our algorithm on 720 known animal miRNA:target pairs in …

Survey of computational algorithms for microRNA target prediction

D Yue, H Liu, Y Huang - Current genomics, 2009 - ingentaconnect.com
… their targets, it is difficult to predict targets of animal miRNAs by accessing their alignment to
… for miRNA target prediction are being considered as essential methods in miRNA research. …

Got target?: computational methods for microRNA target prediction and their extension

H Min, S Yoon - Experimental & molecular medicine, 2010 - nature.com
predict miRNA targets and introduce some computational algorithms that have been developed
for miRNA target predictionpredict animal miRNA targets with high specificity. However, …

Computational prediction and experimental validation of evolutionarily conserved microRNA target genes in bilaterian animals

K Takane, K Fujishima, Y Watanabe, A Sato, N Saito… - BMC genomics, 2010 - Springer
… information was efficient in extracting evolutionarily conserved miRNA target-gene candidates.
Our findings reveal that miRNA target sites were conserved among various species, and …

Comprehensive overview and assessment of computational prediction of microRNA targets in animals

X Fan, L Kurgan - Briefings in bioinformatics, 2015 - academic.oup.com
… We observe that these reviews summarized the latest miRNA target predictors at the time
of their publication and compared or at least described the methodology used by these …

Combinatorial microRNA target predictions

A Krek, D Grün, MN Poy, R Wolf, L Rosenberg… - Nature …, 2005 - nature.com
… and for combinations of microRNAs. We find that vertebrate microRNAs target, on average,
roughly … Our data suggest that most animal microRNAs recognize targets in genomic DNA by …