Molecular docking for virtual screening of natural product databases

DL Ma, DSH Chan, CH Leung - Chemical science, 2011 - pubs.rsc.org
Molecular docking enables the extraordinary structural diversity of natural products to be …
of molecular docking in virtual screening for the identification of bioactive molecules from …

Computational molecular docking and virtual screening revealed promising SARS-CoV-2 drugs

M Hosseini, W Chen, D Xiao… - Precision clinical medicine, 2021 - academic.oup.com
… In summary, our computational molecular docking approach and virtual screening identified
some promising candidate SARS-CoV-2 inhibitors that may be considered for further clinical …

Virtual screening based on molecular docking of possible inhibitors of Covid-19 main protease

EM Marinho, JB de Andrade Neto, J Silva… - Microbial …, 2020 - Elsevier
… Our molecular docking routines demonstrated that this molecule led to the formation of three
interactions with the protein target, one of the Conventional Hydrogen Bond type (Tyr239 (…

Molecular docking and virtual screening based prediction of drugs for COVID-19

S Talluri - … Chemistry & High Throughput Screening, 2021 - ingentaconnect.com
… Input for molecular docking based virtual screening was prepared by using Obabel and
customized python, bash, and awk scripts. Molecular docking calculations were carried out with …

New approach to molecular docking and its application to virtual screening of chemical databases

CA Baxter, CW Murray, B Waszkowycz… - Journal of chemical …, 2000 - ACS Publications
Virtual screening involves a number of different … a virtual compound collection to a more
manageable size. In this paper we describe the use of molecular docking as a virtual screening

Evaluations of molecular docking programs for virtual screening

K Onodera, K Satou, H Hirota - Journal of chemical information …, 2007 - ACS Publications
… programs are currently available, and the selection of docking program is difficult without …
In this study, the screening performances of three molecular docking programs, DOCK, …

[HTML][HTML] Practical considerations in virtual screening and molecular docking

M Berry, B Fielding, J Gamieldien - Emerging trends in …, 2015 - ncbi.nlm.nih.gov
… a virtual screening study, while simultaneously providing a theoretical explanation of docking
… This review will provide guidelines, but there is no “one-rule-fits-all” in molecular docking. …

Dockey: a modern integrated tool for large-scale molecular docking and virtual screening

L Du, C Geng, Q Zeng, T Huang, J Tang… - Briefings in …, 2023 - academic.oup.com
… used molecular docking tool for study of protein–ligand interactions and virtual screening.
Although many tools have been developed to streamline and automate the AutoDock docking

Computational approaches for protein function prediction: a combined strategy from multiple sequence alignment to molecular docking-based virtual screening

CL Pierri, G Parisi, V Porcelli - … et Biophysica Acta (BBA)-Proteins and …, 2010 - Elsevier
… ligand docking and structure-based virtual screening of chemical libraries. Most docking
algorithms allow building a list sorted by energy of the lowest energy docking configuration for …

Docking and virtual screening in drug discovery

M Kontoyianni - Proteomics for drug discovery: Methods and protocols, 2017 - Springer
… Structure-based virtual screening (VS) has been a staple for more than a decade now in
drug discovery with its underlying computational technique, docking, extensively studied. …