… depends on the FAST5 file format, which does not allow efficient parallel analysis… nanopore dataanalysis. Using the example of DNA methylation profiling of a human genome, analysis …
… community lacks a standardized toolkit for the analysis of nanopore datasets. … nanopore sequencing devices from MinION™ for the purposes of quality control and downstream analysis. …
… read lengths make nanopores a promising technology for high-throughput sequencing. We evaluated and optimized the performance of the MinION nanopore sequencer using M13 …
Y Wang, Y Zhao, A Bollas, Y Wang, KF Au - Nature biotechnology, 2021 - nature.com
… For example, genome 105 , transcriptome 42 and metagenome 106 assemblies have shown superior performance with hybrid sequencingdata compared to either error-prone long …
V Shabardina, T Kischka, F Manske… - …, 2019 - academic.oup.com
… effortless and reliable analysis of MinION sequencingdata for experienced bioinformaticians, as … the basic algorithm necessary for MinION sequencinganalysis from the first to last step. …
M Watson, M Thomson, J Risse, R Talbot… - …, 2015 - academic.oup.com
… and visualize MinION nanoporesequencingdata. As a package for R, poRe is available for both Windows and Linux, and crucially the Windows version will allow dataanalysis on the …
… can be trained with real sequencingdata. The use of … of nanoporesequencingdata and limiting the impact of base modifications, insertions, and deletions commonly present in raw data …
… (for sequencing kits 1D) or R9.5 (for sequencing kits 1D 2 ) nanopores arranged in 512 channels, is capable to generate 10–20 Gb of DNA sequencedata over a 48 hours sequencing …
… error profile, quality and yield data. NanoOK is multi-reference, enabling detailed analysis of metagenomic or multiplexed samples. Four popular Nanopore aligners are supported and it …