[HTML][HTML] Nanopore sequencing and its application to the study of microbial communities

L Ciuffreda, H Rodríguez-Pérez, C Flores - Computational and structural …, 2021 - Elsevier
… Given that long reads facilitate accessing repetitive elements and structural variants, nanopore
sequencing has improved our capacity for de novo assembly of genomes, metagenomes, …

The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community

M Jain, HE Olsen, B Paten, M Akeson - Genome biology, 2016 - Springer
Nanopore MinION, the dominant platform currently available. We then discuss pioneering
applications executed by the genomics community… a functional nanopore sequencing platform (…

Ultra-deep, long-read nanopore sequencing of mock microbial community standards

SM Nicholls, JC Quick, S Tang, NJ Loman - Gigascience, 2019 - academic.oup.com
… Whole-genome sequencing of microbial communities (metagenomics) has revolutionized
our view of microbial evolution and diversity, with numerous potential applications for …

Oxford Nanopore sequencing: new opportunities for plant genomics?

K Dumschott, MHW Schmidt, HS Chawla… - Journal of …, 2020 - academic.oup.com
… Here we discuss the benefits of ONT, especially for the plant science community, and
describe the issues that remain to be addressed when using ONT for plant genome sequencing. …

Oxford Nanopore MinION sequencing and genome assembly

H Lu, F Giordano, Z Ning - Genomics, Proteomics and …, 2016 - academic.oup.com
… release of the long read sequencer MinION has thus generated much excitement and interest
in the genomics community. While de novo genome assemblies can be cheaply produced …

Emu: species-level microbial community profiling of full-length 16S rRNA Oxford Nanopore sequencing data

KD Curry, Q Wang, MG Nute, A Tyshaieva, E Reeves… - Nature …, 2022 - nature.com
… The 16S Nanopore sequencing library was prepared from 10 ng total DNA using the 16S
Barcoding Kit (ONT, cat. no. SQK-RAB204). The whole-genome Nanopore library was …

Complete, closed bacterial genomes from microbiomes using nanopore sequencing

EL Moss, DG Maghini, AS Bhatt - Nature biotechnology, 2020 - nature.com
… Employing a strategy to improve metagenomic assembly of related communities 12 , we
coassembled samples P2-A and P2-B and obtained a 1.7-fold increase in assembly N50 (384 …

Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies

V Sevim, J Lee, R Egan, A Clum, H Hundley, J Lee… - Scientific data, 2019 - nature.com
… , and hybrid assemblies as well as diagnostics, our study shows that shotgun metagenome
data generated on the MinION yields community representation and improved genome

Genopo: a nanopore sequencing analysis toolkit for portable Android devices

H Samarakoon, S Punchihewa, A Senanayake… - Communications …, 2020 - nature.com
… and accommodate small or large genomes. As the first ever smartphone application for
nanopore sequencing analysis, Genopo enables the genomics community to harness this cheap, …

Assembly methods for nanopore-based metagenomic sequencing: a comparative study

A Latorre-Pérez, P Villalba-Bermell, J Pascual… - Scientific reports, 2020 - nature.com
nanopore sequencing exclusively for assembling low-complexity microbial communities, …
retrieve extremely contiguous genomes directly from simple microbial communities. However, …