Nanopore sequencing: a rapid solution for infectious disease epidemics

Y Cao, J Li, X Chu, H Liu, W Liu, D Liu - Science China Life Sciences, 2019 - Springer
Nanopore platforms are much better suited for on-site sequencing and genetic analysis of
epidemics. The Nanopore sequencing platforms sequenceNanopore sequencing for rapid

Accelerated identification of disease-causing variants with ultra-rapid nanopore genome sequencing

SD Goenka, JE Gorzynski, K Shafin, DG Fisk… - Nature …, 2022 - nature.com
rapid nanopore WGS that combines an optimized sample preparation protocol, distributing
sequencing … Nucleated cells were then isolated by centrifuging the solution at 15,000g for 30 s…

[HTML][HTML] Nanopore sequencing technology, bioinformatics and applications

Y Wang, Y Zhao, A Bollas, Y Wang, KF Au - Nature biotechnology, 2021 - nature.com
Rapid advances in nanopore technologies for sequencing single long DNA and RNA …
In an electrolytic solution, a constant voltage is applied to produce an ionic current through …

Rapid nanopore sequencing of plasmids and resistance gene detection in clinical isolates

JK Lemon, PP Khil, KM Frank… - Journal of clinical …, 2017 - Am Soc Microbiol
Nanopore sequencers offer a potential solution to this problem for clinical microbiology labs
… In this work, we assessed the feasibility of nanopore sequencing and AMR gene annotation …

The potential and challenges of nanopore sequencing

D Branton, DW Deamer, A Marziali, H Bayley… - Nature …, 2008 - nature.com
… that makes inexpensive, rapid DNA sequencing a possibility. … nanopore sequencing, with
a goal of engaging the broader community of scientists and engineers to propose solutions

Comparison of nanopore sequencing protocols and real-time analysis for phytopathogen diagnostics

T Phannareth, SO Nunziata, MJ Stulberg… - Plant Health …, 2020 - Am Phytopath Society
… Oxford Nanopore Technologies (ONT) MinION sequencersequencing with the advantages
of portability, rapid results … N-lauroylsarcosine sodium salt solution and then incubated at 70…

Nanopore‐Based, Rapid Characterization of Individual Amyloid Particles in Solution: Concepts, Challenges, and Prospects

J Houghtaling, J List, M Mayer - Small, 2018 - Wiley Online Library
… can probe multiple physical parameters of individual particles in solution, we suggest that …
initial steps toward a rapid and robust amyloid characterization platform using nanopores. If …

A world of opportunities with nanopore sequencing

RM Leggett, MD Clark - Journal of experimental botany, 2017 - academic.oup.com
… prospect of putting cell solutions into the device and receiving raw sequencing data out of
… are likely to see rapid progress as more members of the nanopore community start to exploit …

Nanopore sequencing data analysis: state of the art, applications and challenges

A Magi, R Semeraro, A Mingrino, B Giusti… - Briefings in …, 2018 - academic.oup.com
… data, and we carry out a comprehensive and up-to-date survey of the algorithmic solutions
adopted by the bioinformatic community comparing performance and reporting limits and …

A sample-to-report solution for taxonomic identification of cultured bacteria in the clinical setting based on nanopore sequencing

SM Neuenschwander, MA Terrazos Miani… - Journal of clinical …, 2020 - Am Soc Microbiol
… that the combination of nanopore sequencing and LORCAN pipeline offers a significant
improvement over the well-established Sanger or short-read sequencing approaches in terms of …